G2140190


Basic Information

Item Value
gene id G2140190
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 1004968 ~ 1057478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2447856
ggattcaccaaagtcttctgagaatgagtaaatgtccaaactgaaaatgaaagcaaagtcagatttttcaagtcagttgagatttcgaccaagaccagagatttctgttggcctggcaatcgagcacagatttcttccTCAGGGGTTTgtatacttctcgaaattacatgttcaaaacaacctgcattggccgggaatcgaacccgggcctcccgcgtggcaggcaagaattctaccactgaacaaccaatgccttggaatactgagataatgctggaaatcgtatcataaagctttatctccaagcatatttttcgcatagtgggctcagctacattgttcaccctaaaaaaaaagcagtcctttctccccgtcggggaattgaaccccggtctcccgcgtgacaggcggggatactcaccactatactaacgaggagctggtgtggtggatgtttgaaaaaacgtggagcattggtactaactatacgtttgcagtgttgggctttaacacttctaacaaaaacatctgtatagactgaatggttagagctagaaactactgtgacccctctatggaaagctgggactctcacgaaaacgtacatgtaatcgatttcgctctataccactcacaagccacacactcgtagttagaaggtgacgtgtttgtgggatgtcccaggacattgtcacaaatgccaaactcaagacagttgtcgatgactagttggttactcgtttcccatttaacaacttaagccttgcacaaagtaaatcacctcacacactggacatctacaatggattcaccaa
>TU2447857
ggattcaccaaagtcttctgagaatgagtaaatgtccaaactgaaaatgaaagcaaagtcagatttttcaagtcagttgagatttcgaccaagaccagagatttctgttggcctggcaatcgagcacagatttcttccTCAGGGGTTTgtatacttctcgaaattacatgttcaaaacaacctgcattggccgggaatcgaacccgggcctcccgcgtggcaggcaagaattctaccactgaacaaccaatgccttggaatactgagataatgctggaaatcgtatcataaagctttatctccaagcatatttttcgcatagtgggctcagctacattgttcaccctaaaaaaaaagcagtcctttctccccgtcggggaattgaaccccggtctcccgcgtgacaggcggggatactcaccactatactaacgaggagctggtgtggtggatgtttgaaaaaacgtggagcattggtactaactatacgtttgcagtgttgggctttaacacttctaacaaaaacatctgtatagactgaatggttagagctagaaactactgtgacccctctatggaaagctgggactctcacgaaaacgtacatgtaatcgatttcgctctataccactcacaagccacacactcgtagttagaaggtgacgcgtttgtgggatgtcccaggacattgtcacaaatgccaaactcaagacagttgtcgatgactagttggttactcgtttcccatttaacaactaaagccttgcacaaagtaaatcacctcacacactggacatctacaatggattcaccaaagtcttctgagaatgagtaaatgtccaaactgaaaatgaaagcaaagtcagatttttcaagtcagttgagatttcgaccaagaccagagatttctgttggcctggcaatcgagcacagatttcttccTCAGGGGTTTgtatacttctcgaaattacatgttcaaaacaacctgcattggccgggaatcgaacccgggcctcccgcgtggcaggcaagaattctaccactgaacaaccaatgccttggaatactgagataatgctggaaatcgtatcataaagctttatctccaagcatatttttcgcatagtgggctcagctacattgttcaccctaaaaaaaaagcagtcctttctccccgtcggggaattgaaccccggtctcccgcgtgacaggcggggatactcaccactatactaacgaggagctggtgtggtggatgtttgaaaaaacgtggagcattggtactaactatacgtttgcagtgttgggctttaacacttctaacaaaaacatctgtatagactgaatggttagagctagaaactactgtgacccctctatggaaagctgggactctcacgaaaacgtacatgtaatcgatttcgctctataccactcacaagccacacactcgtagttagaaggtgacgcgtttgtgggatgtcccaggacattgtcacaaatgccaaactcaagacagttgtcgatgactagttggttactcgtttcccatttaacaactaaagccttgcacaaagtaaatcacctcacacactggacatcta
>TU2447854
gtttgcatacttctcgaaattacatgttcaaaacatcctgcattggccgggaatcgaacccgagcctcccgcatggcaggcgagaattctaccactgaacaaccaatgccttggaatactgagataatgctggaaatcgtatcataaagctttatctccaagcatatttttcgcatagtgggctcagctacattgttcaccctaaaaaaaaagcagtcctttctccccgtcggggaattgaaccccggtctcccgcgtgacaggcggggatactcaccactatactaacgaggagctggtgtggtggatgtttgaaaaaacgtggagcattggtactaactatacgtttgcagtgttgggctttaacacttctaacaaaaacatctgtatagactgaatggttagagctagaaactactgtgacccctctatggaaagctgggaCTCTCACggaaacgtacatgtaatcgatttcgctctataccactcacaggccacacactcgtagttagaaggtgacgtgtttgtgggatgtcccaggacattgtcacaaatgccaaactcaagacagttgtcgatgactagttggttactcgtttcccatttaacaacttaagccttgcacaaagtaaatcacctcacacactggacatctacaatggattcaccaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2447856 False 815 lncRNA 0.44 2 1004968 1057478
TU2447857 False 1604 lncRNA 0.44 2 1004968 1009776
TU2447854 True 671 lncRNA 0.45 2 1009121 1049812

Neighbor

gene id symbol gene type direction distance location
LOC110509503 LOC106562869 coding upstream 160955 835828 ~ 844013 (+)
LOC110509499 LOC106562841 coding upstream 301142 694527 ~ 703826 (+)
LOC110509498 LOC106562841 coding upstream 310620 691741 ~ 694348 (+)
LOC110509496 LOC106562840 coding upstream 354842 632021 ~ 650126 (+)
LOC100305272 dpm2 coding upstream 375971 619789 ~ 629216 (+)
LOC110509506 LOC106562870 coding downstream 214018 1271496 ~ 1429741 (+)
LOC110509509 LOC106562874 coding downstream 461938 1519416 ~ 1532574 (+)
LOC110509512 LOC106562877 coding downstream 497147 1554625 ~ 1558840 (+)
LOC110509295 LOC106562719 coding downstream 515024 1572502 ~ 1618684 (+)
LOC110509513 LOC106562718 coding downstream 597114 1654592 ~ 1662205 (+)
G2140185 NA non-coding upstream 8139 996602 ~ 996829 (+)
G2140166 NA non-coding upstream 32194 972516 ~ 972774 (+)
G2140165 NA non-coding upstream 32574 971572 ~ 972394 (+)
G2140158 NA non-coding upstream 36946 967298 ~ 968022 (+)
G2139528 NA non-coding upstream 145126 859529 ~ 859842 (+)
G2140207 NA non-coding downstream 11977 1069455 ~ 1069900 (+)
G2140208 NA non-coding downstream 14076 1071554 ~ 1071806 (+)
G2140212 NA non-coding downstream 18039 1075517 ~ 1076253 (+)
G2140214 NA non-coding downstream 25546 1083024 ~ 1083394 (+)
G2140215 NA non-coding downstream 26695 1084173 ~ 1084408 (+)
G2139520 LOC106562868 other upstream 151181 852249 ~ 853787 (+)
LOC110509291 LOC106562839 other upstream 414164 536258 ~ 614583 (+)
G2139202 NA other upstream 679920 324366 ~ 325048 (+)
G2139145 NA other upstream 846135 158015 ~ 158833 (+)
LOC110509486 LOC106562830 other upstream 855715 131779 ~ 149258 (+)
LOC110509554 LOC105007341 other downstream 880906 1935597 ~ 1941376 (+)
G2142277 NA other downstream 2025739 3083217 ~ 3083571 (+)
G2142386 LOC106562824 other downstream 2261471 3318949 ~ 3324094 (+)

Expression


Co-expression Network