G2140191


Basic Information

Item Value
gene id G2140191
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 1015116 ~ 1033840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2447865
tcaagtcagttgagatttcgaccaagaccagagatttctgttggcctggcaatcgagcacagatttcttcctcaggggtttgcatacttctcgaaattacatgttcaaaacatcctgcattggccgggaatcgaacccgggcctcccgcgtggcaggcgagaattctaccactgaacaaccaatgccttggaaaactgagataatgctggaaatcgtatcataaagctttatctccaagcatatttttcgcatagtgggctcagctacattgttcaccctaaaaaaaaagcagtcctttctccccgtcggggaattgaaccccggtctcccgcgtgacaggcggggatactcaccactatactaacgaggagctggtgtggtggacgtttgaaaaaacgtggagctttggtactaactatacgtttgcagtgttgggatttaacacttctaacaaaaacatctgtatagactgaatggttagagctagaaactactgtgacccctctatggaaagctgggactcacgaaaacgtacatgtaatcgatttcgctctataccactcacaggccacacactcgtagttagaaggtgacgcgtttgtgggatgtcccaggacattgtcacaaatgccaaactcaagacagttgtcgatgactagttggttactcgtttcccatttaacaactaaagccttgcacaaagtaaatcacctcacacactggacatctacaatggattcaccaaagtcttctgagaatgagtaaatgtccaaactgaaaatgaaagcaaagtcagatttttcaagagtcagttgagatttctgttggcctggca
>TU2447866
tcaagtcagttgagatttcgaccaagaccagagatttctgttggcctggcaatcgagcacagatttcttcctcaggggtttgcatacttctcgaaattacatgttcaaaacatcctgcattggccgggaatcgaacccaggcctcccgcgtggcaggcgagaattctaccactgaacaaccaatgccttggaatactgagataatgctggaaaatcgtatcataaagctttatctccaagcatatttttcgcatagtgggctcagctacattgttcaccctaaaaaaaaagcagtcctttctccccgtcggggaattgaaccccggtctcccgcgtgacaggcggggatactcaccactatactaacgaggagctggtgtggtggatgtttgaaaaaacgtggagcattggtactaactatacgtttgcagtgttgggctttaacacttctaacaaaaacatctgtatagactgaatggttagagctagaaactactgtgacccctctatggaaagctgagactctcacgaaaacg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2447865 False 836 lncRNA 0.45 2 1015116 1019154
TU2447866 True 536 lncRNA 0.46 2 1015116 1033840

Neighbor

gene id symbol gene type direction distance location
LOC110509503 LOC106562869 coding upstream 171103 835828 ~ 844013 (+)
LOC110509499 LOC106562841 coding upstream 311290 694527 ~ 703826 (+)
LOC110509498 LOC106562841 coding upstream 320768 691741 ~ 694348 (+)
LOC110509496 LOC106562840 coding upstream 364990 632021 ~ 650126 (+)
LOC100305272 dpm2 coding upstream 386119 619789 ~ 629216 (+)
LOC110509506 LOC106562870 coding downstream 237656 1271496 ~ 1429741 (+)
LOC110509509 LOC106562874 coding downstream 485576 1519416 ~ 1532574 (+)
LOC110509512 LOC106562877 coding downstream 520785 1554625 ~ 1558840 (+)
LOC110509295 LOC106562719 coding downstream 538662 1572502 ~ 1618684 (+)
LOC110509513 LOC106562718 coding downstream 620752 1654592 ~ 1662205 (+)
G2140185 NA non-coding upstream 18287 996602 ~ 996829 (+)
G2140166 NA non-coding upstream 42342 972516 ~ 972774 (+)
G2140165 NA non-coding upstream 42722 971572 ~ 972394 (+)
G2140158 NA non-coding upstream 47094 967298 ~ 968022 (+)
G2139528 NA non-coding upstream 155274 859529 ~ 859842 (+)
G2140207 NA non-coding downstream 35615 1069455 ~ 1069900 (+)
G2140208 NA non-coding downstream 37714 1071554 ~ 1071806 (+)
G2140212 NA non-coding downstream 41677 1075517 ~ 1076253 (+)
G2140214 NA non-coding downstream 49184 1083024 ~ 1083394 (+)
G2140215 NA non-coding downstream 50333 1084173 ~ 1084408 (+)
G2139520 LOC106562868 other upstream 161329 852249 ~ 853787 (+)
LOC110509291 LOC106562839 other upstream 424312 536258 ~ 614583 (+)
G2139202 NA other upstream 690068 324366 ~ 325048 (+)
G2139145 NA other upstream 856283 158015 ~ 158833 (+)
LOC110509486 LOC106562830 other upstream 865863 131779 ~ 149258 (+)
LOC110509554 LOC105007341 other downstream 904544 1935597 ~ 1941376 (+)
G2142277 NA other downstream 2049377 3083217 ~ 3083571 (+)
G2142386 LOC106562824 other downstream 2285109 3318949 ~ 3324094 (+)

Expression


Co-expression Network