G2140212


Basic Information

Item Value
gene id G2140212
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 1075517 ~ 1076253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2447890
ttctccctcaggggtttgcatacttctcgaaattacatgttcaaaacatcctgcattggccgggaatcgaacccgggcctcccgcatggcaggcgagaattctaccactgaacaaccaatgccttggaatactgagataatgctggaaatcgtatcataaagctttatctccaagcatatttttcgcatagtgggctcagctacattgttcaccctaaaaaaaaaagcagtcctttctccccgtcggggaattgaaccccggtctcccgcgtgacaggcggggatactcaccactatactaacgaggagctggtgtggtggacgtttgaaaaaacgtggagcattggtactaactataagtttgcagtgttgggctttaacacttctaacaaaaacatctgtatagactgaatggttagagctagaaactactgtgacccctctatggaaagctgagactctcacgaaaacgtacatgtaatcgatttcgctctataccactcacaggccacacactcgtagttagaaggtgacgcgtttgtgggatgtcccaggacattgtcacaaatgccaaactcaagacagttgtcgatggctagttggttactcgtttcccatttaacaacttaagccttgcacaaagtaaatcacctcacacactggacatctacaatggattcaccaaagtcttctgagaatgagtaaatgtccaaactgaaaatgaaagcaaagtcaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2447890 True 737 lncRNA 0.45 1 1075517 1076253

Neighbor

gene id symbol gene type direction distance location
LOC110509503 LOC106562869 coding upstream 231504 835828 ~ 844013 (+)
LOC110509499 LOC106562841 coding upstream 371691 694527 ~ 703826 (+)
LOC110509498 LOC106562841 coding upstream 381169 691741 ~ 694348 (+)
LOC110509496 LOC106562840 coding upstream 425391 632021 ~ 650126 (+)
LOC100305272 dpm2 coding upstream 446520 619789 ~ 629216 (+)
LOC110509506 LOC106562870 coding downstream 195243 1271496 ~ 1429741 (+)
LOC110509509 LOC106562874 coding downstream 443163 1519416 ~ 1532574 (+)
LOC110509512 LOC106562877 coding downstream 478372 1554625 ~ 1558840 (+)
LOC110509295 LOC106562719 coding downstream 496249 1572502 ~ 1618684 (+)
LOC110509513 LOC106562718 coding downstream 578339 1654592 ~ 1662205 (+)
G2140208 NA non-coding upstream 3711 1071554 ~ 1071806 (+)
G2140207 NA non-coding upstream 5617 1069455 ~ 1069900 (+)
G2140190 NA non-coding upstream 18039 1004968 ~ 1057478 (+)
G2140191 NA non-coding upstream 41677 1015116 ~ 1033840 (+)
G2140185 NA non-coding upstream 78688 996602 ~ 996829 (+)
G2140214 NA non-coding downstream 6771 1083024 ~ 1083394 (+)
G2140215 NA non-coding downstream 7920 1084173 ~ 1084408 (+)
G2140226 NA non-coding downstream 28088 1104341 ~ 1105020 (+)
G2140229 NA non-coding downstream 34425 1110678 ~ 1111439 (+)
G2140234 NA non-coding downstream 37108 1113361 ~ 1113656 (+)
G2139520 LOC106562868 other upstream 221730 852249 ~ 853787 (+)
LOC110509291 LOC106562839 other upstream 484713 536258 ~ 614583 (+)
G2139202 NA other upstream 750469 324366 ~ 325048 (+)
G2139145 NA other upstream 916684 158015 ~ 158833 (+)
LOC110509486 LOC106562830 other upstream 926264 131779 ~ 149258 (+)
LOC110509554 LOC105007341 other downstream 862131 1935597 ~ 1941376 (+)
G2142277 NA other downstream 2006964 3083217 ~ 3083571 (+)
G2142386 LOC106562824 other downstream 2242696 3318949 ~ 3324094 (+)

Expression


Co-expression Network