G2140581


Basic Information

Item Value
gene id G2140581
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 1637304 ~ 1639268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2448289
ACTTTAACTATCCCAGggtagtgattggggacattgccctgtgtaaggtgctgtctttcagatgggatgttaaatggatATCCTGACTAAAGACCCTGGGGGGTTAACCtaggtgtcctggctaaattccccatctggccctcataccatcatggctgCCTAATCAACCCCAACTTACAATAATCATTTATCTCCCCTGTAACTTTTCACCAGGTTGTTGctttaaataagaatgtgttctcagtcaatttacctggtaaaataagggttcattactttatttttttacacccTAGATCGGCTAGATGCCAATGTCaatacccactgggcaaaaactggtttaatcaacattgtttccGCCTTATTTCATCCCAAAAAATCAATGTGATGACaatgaatcaacatggaaaactgattggatttgcaaaaagtcatcaaagTAAGGGCATTTTGTCGAAAGAAAAATGTACATCTATGTAGGCTATTATATTATTTTAGCCAGCTCCTGCTATTATTTTGGATGTCTGTAAAACCCctccatgtagtctatatgcccaTCATGGAATGAGAGATGAGATCATCCGGTGACACTATTTTCCTGTTACTATTTTCCATTTAGTTTGTTAAAAAAACCAAGCCCTTTGTagtgttaggttcttatttttcagagtaaataaatctcacggacactagagaagctttaaccaagtttaattcttcccaaagttTCTGTACAGCTGTATTCAGACACCCAGATATTTATATCCCACTTAAGacactccttctttctctccaatccttacattttATGGTCCTACAGGAAGAGAGTAAAGAGGGTAACAGGATAGCAAACCTTTATTACTCCCTTAAGGGaatctgtcctcacctcctgacctcaactcctCCTTCCTCTAATCCATCTGTCTTTCCTGTATCAACACCGCGCTTTGCTCACGTCCCCCAACACATTCCACAGCTATCTGTCTTTCTACTGAGGCCCAGCCTCTTTCTCCTTTGATTCTATGCTTCTTTCctatcatttatttaatatctcaatgttcaaaatgtcGACTCCAACAGTAGGCTGCCCTCACACTACCATAACCAAagctggttcaacagcaatgcGACTGATGTCTTTCTTATCCTGGCCATGTATTAGCCAAGTAGTCTATCCATAAAAGGTTCCTAAATGGTATACTCGCGAGGCTTTTGCCGACATGCTTTTGCAATATTCTCAATTCACATAGGCGTATCTTTGGTGCACACTCCATTCGACTTGTATCCATCCCGTTACCAAAGACGACCTCCTCCGACCTCCTCCAAAGAAGTGGGATGCTTGAAGGACTATACTCGTTGAAACCAATTACAACATAATGTTGACTGTCAACACATAATGAACAAACACTGGATGTTTGTTTTTACTTTTACTGTCACACGTTAATGTAGCCATTGCTATTTAATAAACTGCAGTATCAATCCACAATAGACTAGGATCGGACGATATAATTAGTGCCCCCAGCCAAATGGGAGTTGATGACAACTCAAAGACCGTCAATAATCTACAGAATTTGAGACAAACACATGCAGTATTAAGCCATGGAACTGCTTGATTGGCCAGTGACTGGCCAAGGCCTCCTCACACCTACAACTTTATTCATCAAAACCAAACCCTTTCACTCCACTGCCAGCTCTTGCACTCTGTGAAAATATAGAAAATATTTATGACACACCCCCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2448289 True 1740 lncRNA 0.40 3 1637304 1639268

Neighbor

gene id symbol gene type direction distance location
LOC110509295 LOC106562719 coding upstream 18620 1572502 ~ 1618684 (+)
LOC110509512 LOC106562877 coding upstream 78464 1554625 ~ 1558840 (+)
LOC110509509 LOC106562874 coding upstream 104730 1519416 ~ 1532574 (+)
LOC110509506 LOC106562870 coding upstream 207563 1271496 ~ 1429741 (+)
LOC110509503 LOC106562869 coding upstream 793291 835828 ~ 844013 (+)
LOC110509513 LOC106562718 coding downstream 15324 1654592 ~ 1662205 (+)
LOC110509514 LOC106562918 coding downstream 81723 1720991 ~ 1760307 (+)
LOC110509515 LOC106563008 coding downstream 121995 1761263 ~ 1775741 (+)
LOC110509516 LOC106569151 coding downstream 143870 1783138 ~ 1821590 (+)
LOC110509558 cnnm3 coding downstream 187243 1826511 ~ 1852848 (+)
G2140580 NA non-coding upstream 1479 1621003 ~ 1635825 (+)
G2140593 NA non-coding upstream 23430 1612314 ~ 1613874 (+)
G2140577 NA non-coding upstream 66543 1570463 ~ 1570761 (+)
G2140575 NA non-coding upstream 68397 1568700 ~ 1568907 (+)
G2140468 NA non-coding upstream 76879 1560137 ~ 1560425 (+)
G2140605 NA non-coding downstream 938 1640206 ~ 1640438 (+)
G2140609 NA non-coding downstream 13339 1652607 ~ 1652843 (+)
G2140667 NA non-coding downstream 183578 1822846 ~ 1826321 (+)
G2140692 NA non-coding downstream 224774 1864042 ~ 1864303 (+)
G2140693 NA non-coding downstream 225122 1864390 ~ 1864645 (+)
G2139520 LOC106562868 other upstream 783517 852249 ~ 853787 (+)
LOC110509291 LOC106562839 other upstream 1046500 536258 ~ 614583 (+)
G2139202 NA other upstream 1312256 324366 ~ 325048 (+)
LOC110509554 LOC105007341 other downstream 299116 1935597 ~ 1941376 (+)
G2142277 NA other downstream 1443949 3083217 ~ 3083571 (+)
G2142386 LOC106562824 other downstream 1679681 3318949 ~ 3324094 (+)
G2144385 NA other downstream 3388483 5027751 ~ 5028239 (+)
G2144416 NA other downstream 3395921 5035189 ~ 5035913 (+)

Expression


Co-expression Network