G2140667


Basic Information

Item Value
gene id G2140667
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 1822846 ~ 1826321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2448388
CAACTACAATACTAGCTCATTTTCCTGCTTGTATAATTTCACATAATAAGCAGTGGACTAGCATTTGGGTGTCTGAGTTGCTGTGGTTTAACATGATTGGTTGCTTTGGAGTGTTATTGAGTGATGTCACAATGGAATATAGAAGTCACTGTTTTCAGGGGTGATGTCACTGTGGAGTTAAAATTCCACTTTGTGATGCCACAATGGAGTTGAGTTCAGAGTTTGTGTGTGATGTCACAGTGGAGTTTAGAATGGAGTTTTACTGTGTGATGATACAATCAGTGAGGGGTTGTTGCCACTGCTAATGACATGAAAAAAGGCACGCCACCTCCACCACATTGTAGGTACTCCAAAAAGACATTCCAAAAACAGGGGATCCACAATTGACCCTTCAGATTCAATCTGATGTAGGATTTATTGTGTGTATAAATGAAGCTGTTACACGCACTGTGCCCTGCCGTGCTGTCTTAGAGATGACTACATGTGTTTCCCTCACCATGCATTCTCTCTGGGTGGAGGGCAGACCACACATATAATGCTGCTATCATCTACCTATCTTGATCCCTAGAAATATATTATGAAGTGACAATGAAGTAACTCAAGCAACGGTCGACATGAAGGAAAAGAATGTACACATACACATGTATTTCTATGTAAATACATACCACTGATAAGAATATCACTTTAGAACAACGAGCGAGAACTGAGTATTTATTCCAAAGAATTTCTGTAAGGTCTGTTCCACAGGGACGAGTTCCTACCTGAGTTTTAAGAGTATATCCCCTCCTTAGAATTGGAATAAATAGAACGGACACACGCCCCTCCGTACAGGGTATTGAATGGGGTCGTCGATTCTAGGATTTCTAAGTCTATGGTTGGTGCAGCcttacacactactacacacaaaAACCCTAGACCTGACTGCTGGTTCACATAGGTCACTTCATAGCATTGGGCCTTACTGGTTCCGTTACACCACTGGTCTAGTTCCCAGTCTAGCCACTGGTTGGCTGCGAAGGTCCTAGTCTACTGAGAACGGTCAGATTATGAAAGTGTTGTTCGACTACTTAGAAATGTTGTATTTATTTGAAAAGTAATAATATTCTGTCATTTTTGTTCTGTGTTCTCTCATGTGAAACAGGCTTTTGTTTTTGACAGACAGTCATGTCTGTCAACGGGTTACTGGGACGAAGGAAGAGATTTGTTATATATTTCCTGCTTGTACTATGTTACTGTGAATACTACTGTATATTGTGAAGACATTGGCATTTGTCTACTATATTATCTGTGATGGGAGTGAGAGGGGGGATGCCTATATGGAACACATGTATAAAGTAACCTCTGTGAGAATACTTACCGGATATACAAACTTTTATCTCCTTCCACTGAGTCATTTTACTTGGAAGATATTGTATTAGCAATAAAATTATTGCTCTGTTTTGACCTCAAAGAACATTTCTACCTTTCTCTCAAATTCATTTTTCCCCCCCATTGAAGTAGCATGTAGTAGCATTCTGACCATGATTTATTGCAGCCGCTGTGTTAATGTAGCTGTTAGTTCGGTCTAGCCAGTCATAACATAAGCTACCTTGCCCTTCACTAGCACTCATCCTTTCTTTCATCTCCTTTCCTTTTCcactcttctttcctctcctcttcctccctactCTGCTACTTTCCTTACCCTCTCCCCCAGCTTCTCTCTCCTCACACCCCCACTTCTTCCCTTCTCCTGCCGGTCATGTTATATTGACATTCCTTGACTGCTGGTCTGAACAGTCTTATAAGCTCTTTTTAATGTCCAGATCCTTCTAGCTGGTGGGTGGTTCCTGGCGGGAGGGCAAGGCTTAACTGGCAGCcaggctctgctctgctgtgttgTTAGCTCAGCCCCAGTGTGATTATTCGACCTAAACGAGGAGGGTTTAAGAGTTCTGGTGCTGTATTCTCAGACCAGGGACAGCTTTTCCACTGTGTAGACAAAGGGGTGCcatactagcctggtcccagatctgtttgggctCTCCGCCAACTACTATATAGGagatggcacaaacagatctgggttcAGGCTGGTGCCATACTGCTAGACTGGGTGCTTGGGAACCAGAACCCTACAATGGAATAGAACACTGTCCTCCAAGAAGGATGTTTTTGTGCATCAATGATTATAAACACTACAGTCTAATACAGGTTACTCAGACAGAGATAAGCACACGAGTCCAGTGTCGGCCCCATATGTAAAAACGCACACTGAACAGTCTGACAGAGACTACGGGTCTGGCCTCCAGGCACacacactattctctctctctgctagagTCTTCCACAAGAAGCTGGTCAGTGATGAAGTTCTAAAGGTTATATTTATTAAAGTTGGGGGTTGGAGTGCTTGTTTTCAACAACTATGACTCATGTTTAATGACTGATCAGCGGTAAGTTCTGTGGTAGAGACTTTTCCCGGTCTGTTGTTTTCTTTTTTGGAGGGGGATGTTGATTTGAAGAGTAAATGCCTGTCACTTCATCTGACCCCTGGGGTTGTTCAACTTAAAGCAAAGTGTACATACTGTTTTATAATGACTTTGGAGGGAGCTGTGAAGAAGTCAACATGGGGTTAATAAACCTGAGTTATATTTCTCTACgaaaacaaaaaaaaagcccAGCAAATGGGTAGTTACAAAGTCGTTAGGCTGCCTAAGTAATCTCAATTATGCGTCAAGGAATATTGACGAAGACCCTTTAAATTTGACTTGTTTTCAAGACTCTCAAACAAAGATGGGCGTGGCACGATACTAATTTTCCCTGCACCCATTGGATGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2448388 True 2820 lncRNA 0.42 3 1822846 1826321

Neighbor

gene id symbol gene type direction distance location
LOC110509516 LOC106569151 coding upstream 1256 1783138 ~ 1821590 (+)
LOC110509515 LOC106563008 coding upstream 47105 1761263 ~ 1775741 (+)
LOC110509514 LOC106562918 coding upstream 62539 1720991 ~ 1760307 (+)
LOC110509513 LOC106562718 coding upstream 160641 1654592 ~ 1662205 (+)
LOC110509295 LOC106562719 coding upstream 204162 1572502 ~ 1618684 (+)
LOC110509558 cnnm3 coding downstream 190 1826511 ~ 1852848 (+)
LOC110509557 LOC106562915 coding downstream 46692 1873013 ~ 1876963 (+)
LOC110509554 LOC105007341 coding downstream 109276 1935597 ~ 1941376 (+)
LOC110509553 LOC106562910 coding downstream 138999 1965320 ~ 2022282 (+)
LOC110509305 NA coding downstream 220856 2047177 ~ 2057296 (+)
G2140609 NA non-coding upstream 170003 1652607 ~ 1652843 (+)
G2140605 NA non-coding upstream 182408 1640206 ~ 1640438 (+)
G2140581 NA non-coding upstream 183578 1637304 ~ 1639268 (+)
G2140580 NA non-coding upstream 187021 1621003 ~ 1635825 (+)
G2140593 NA non-coding upstream 208972 1612314 ~ 1613874 (+)
G2140692 NA non-coding downstream 37721 1864042 ~ 1864303 (+)
G2140693 NA non-coding downstream 38069 1864390 ~ 1864645 (+)
G2140698 NA non-coding downstream 41067 1867388 ~ 1867612 (+)
G2140699 NA non-coding downstream 41396 1867717 ~ 1867950 (+)
G2140701 NA non-coding downstream 51663 1877984 ~ 1878242 (+)
LOC110509506 LOC106562870 other upstream 393112 1271496 ~ 1429741 (+)
G2139520 LOC106562868 other upstream 969059 852249 ~ 853787 (+)
LOC110509291 LOC106562839 other upstream 1232042 536258 ~ 614583 (+)
G2139202 NA other upstream 1497798 324366 ~ 325048 (+)
G2142277 NA other downstream 1256896 3083217 ~ 3083571 (+)
G2142386 LOC106562824 other downstream 1492628 3318949 ~ 3324094 (+)
G2144385 NA other downstream 3201430 5027751 ~ 5028239 (+)
G2144416 NA other downstream 3208868 5035189 ~ 5035913 (+)

Expression


Co-expression Network