G2141474


Basic Information

Item Value
gene id G2141474
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 2118919 ~ 2121440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2449283
TTAGCATTGACAAGAGTTCTCTTTATTGGTAACATATTGTATAACACCTCAACACACAACATTATTATAGAGGAATGCTCATTGGAAGAACAGAATTCATCGTCACTGAAGAAGAACCAAGAAGAGAAATATTGGATTCACATTTACAAACTCCATCTTGTGAAAGTGGATGATGTGAGTCTGATGGCAAGCCCACAATTGACTCTCTACAGAGGACTTAAAATGAAGGTTAGGACTAACAGGACAGTACTAATACTGGAGCGGTTGGCTTTATGTAACTAGAGCTGGATAGGACAAATATACACGCACGTACACAAACAGTTTTAGTTTAATCAATGACCGTGTGAGGTAATGCCATCTCTCTGAGTGACCTTAACCTGAAGGTGTTAGCTGGCCTGATTAGCTCTGATCCTATTACTGAGACTACACAGGTGAGGGTCTACTGGAAAAACACAAAGTGCATGGCCCTGTGTGTGACTGGAGCCTTAAAGTGTGTGTATGCCAGGGCAGGTCTTAGGACAAGCCCAAATGTTTAACCCAATTTCTAAACCTTTTAGATAAAGGTGCTTCAGTGTATATGGTGGCTCCCCCTAGGGGTCCTAGGATTAAGTGCATTGTCAGACAGCAAGGCAAgtcaacagggagggagggacactaCATACTGGTACACTCTACTGAATCACACCATGTGCAGGTTGTTGTTCCAGCCCgcagtGCACACCATGTGGGTCACCTGGACCAGGGGATTCATTTATAAAAGTTCTTAGTTCCTATATTACATTTCTGCCATCACACAATTGTATAATCATTTCTTAAAATATGATTAAATGTCAACACCCATAAATAGTTGTTCACAAAAAAGCACTTTTCATTTATAAATCACAAAACTTAATGCAAAATCTATGTAAATTGCATATTATCATCACATCGTTGATGTGGATTTTGCCATATGGACAATTTATGATCAAATCTGTGCGTACTAACATTTTATAAATGATGCCCCTGGATATATATAGGTACCATATCTGTTCACAATAAAATCATACCAATAACCATATGAAACACTGTTAGTGACCAACCCACTCTGCCTCAGCAATAGAGCCTGTACAAAAGCATGTTTATCAGCATCATCATTACACATTTGTCATCattatcatcctcatcatcatcctcatgaTGGTATACTCTCCAGACAAAAATACTTTGATGCACTTTACAAAGTTCAGAAAATAGACATAGGAGTTCATAGATCACCAGCATTCAGTAAAAAATCCGCACAATTAACAATAACACCAAATTTATCGTCATGTTTCAAATTCATGCAAATAATGCAGTATAGTCACCACAATGAGACTGTAGTATAGTGTGTAATCATTTCAAACGTAAGGTATAGTCAGTGATTATTTGAAACGCTCAACACACAGAGAATCAAGTAATAAGAACCACAATATAGAAAGGTACATGCTGCATCGTCTTCCCTCGTCTTCTCGCGCcaaaggggtggggtggggttgcGGGAGCATACAGTTTATTAGAGGGTAGAGGCCTGTTTCCCTATTTCGGAATAAAAGACAAGCAAAACAGCAGGAAAAACACACCACTACACTAATCCAGTGGGTTTGATGTGCAATGTGTGGTCAGTTCATACGCCAGCTGGGAAGCAGCCTTAAACCTACCTTAAACTTTACACAAGTACGcaatgcaacaaacaaaaaaatgcgaTTAGCTACGGAAAATGTCCATTCTTCGTACTTACATCATGAAAATGAGCAGGACAAAATGCAAGCCCGCAAATTGTACCTCAACACCATTTTGAGTAGCTAATTTTGGTATGCGGGCATGTGTTATGTAAAAAATTGACTTCACTGGAGGAGAACAACTCAACAATAGTCACTGGGAATAACACTGGAGAAGTCATGCTTGCCTTTAAGAGCAAACCAGGGACAAACCACTTTAAAGAGTTTCAACTGGACCATTAAAGATATTGTAAAGTTTCAATATAACAACAACAACTTACTTGCagcaataatagtaataataataataacaacaatagtagtaatagtaatagtataaataataatacagtaaTACACTTGATTTAAACTGTAGATCCTATATGTATGTGTGCCAGGGGTGGGTCtatagcagagggagagagggagaggagagcttgAATACAGGACTGTTGGTTTGAGTCTGAAAACATTTCTAATGGATTGATATGGTTGCAGTAGCAGTCAGATGCtgcagctagtgtgtgtgtgtccgtccaggAGGGGTTGAGGTTGTGTGTTGTTGCGCTGCAGTAGCATGCACTGGCCATTAGGGAGCGctgcaatgggggggggggggggggaagcaggtatctctctccatcctcctctcctctctcactctacaactctctttcttcctttcccctctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2449283 True 2429 lncRNA 0.40 2 2118919 2121440

Neighbor

gene id symbol gene type direction distance location
mrps24 LOC106562909 coding downstream 74400 2042907 ~ 2044519 (-)
LOC118945681 NA coding downstream 174879 1943986 ~ 1944040 (-)
LOC110509556 LOC106562911 coding downstream 175726 1941186 ~ 1943193 (-)
LOC110509306 LOC106562912 coding downstream 182979 1935275 ~ 1935940 (-)
LOC118945677 NA coding downstream 564957 1553886 ~ 1553962 (-)
LOC110509353 LOC106562905 coding upstream 152073 2257334 ~ 2308157 (-)
LOC118945401 NA coding upstream 229839 2351279 ~ 2351397 (-)
LOC118945453 NA coding upstream 230135 2351575 ~ 2351693 (-)
LOC118945455 NA coding upstream 230431 2351871 ~ 2351986 (-)
LOC118945454 NA coding upstream 230704 2352144 ~ 2352262 (-)
G2141497 NA non-coding downstream 89473 1998557 ~ 2029446 (-)
G2141439 NA non-coding downstream 205497 1913150 ~ 1913422 (-)
G2141438 NA non-coding downstream 206081 1912608 ~ 1912838 (-)
G2141413 NA non-coding downstream 262725 1855976 ~ 1856194 (-)
G2141411 NA non-coding downstream 263268 1852087 ~ 1855651 (-)
G2141591 NA non-coding upstream 32589 2154029 ~ 2158058 (-)
G2141601 NA non-coding upstream 63985 2185425 ~ 2185641 (-)
G2141603 NA non-coding upstream 66137 2187577 ~ 2187786 (-)
G2141606 NA non-coding upstream 75822 2197262 ~ 2197503 (-)
G2141607 NA non-coding upstream 76081 2197521 ~ 2197738 (-)
G2141289 LOC100380853 other downstream 469188 1649299 ~ 1649731 (-)
G2141258 NA other downstream 505710 1598021 ~ 1613209 (-)
LOC110509502 LOC106562868 other downstream 1181010 843748 ~ 937986 (-)
LOC110509492 LOC106562836 other downstream 1690847 425727 ~ 437447 (-)
LOC110509490 LOC106562833 other downstream 1717364 398511 ~ 425356 (-)
LOC110509525 LOC106562824 other upstream 1197503 3317596 ~ 3324117 (-)
G2143134 NA other upstream 1506725 3628165 ~ 3635240 (-)
LOC110509531 LOC106570883 other upstream 2200459 4208866 ~ 4430679 (-)
G2144911 NA other upstream 3093643 5215083 ~ 5226311 (-)
G2145316 opi-1 other upstream 3520036 5641476 ~ 5672690 (-)

Expression


Co-expression Network