G2142386 (LOC106562824)


Basic Information

Item Value
gene id G2142386
gene name LOC106562824
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 3318949 ~ 3324094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2450293
TCCAGTTTTATTGCAGCAGGCACTTCACAACAAAATCCCCCATTGTTCAATATACCCCACCCTGCATACCAATTAATTGAATCTCAATCTCTTTATATTAAAATGTACTTCTGTCTGTACAAAAATGACAATGAGAAAAAATGAAATACTACACTAACATATCAGACATACACTCGCAAGCACActgaatgtcacacacacacacacacactggtataaAGGTACAGTACCACTTAATGTACACCCTTCCTTTGACCGGCCATGTTCATGTCTCTTTTCCTTCCTTTCCCCACCCTCAAAGAAACATGCTGATGCTTCTCAATGGTATTAGAACAGAAATGCAACAAAGAACGACCAAATAACTCGTGATAGGGTAAAAATGATAATCCTATACATGAACACATATCCTTTCCTAAATTACAGCTATCCCATACATTTTGAAACTAAAAATAAATGTTCCCTTTGTGTTTTGTCTTTAACTTATGTAGTGTAAGGGTTTTTTCAGTAAGAAATTGTGATAATCTACTTTCCCTTCCACAGAAGGCAGTCACTCCTCTTGCCAGTGGTCATCCGAGACACTCCACGTGATAAAGCCCCTCCCTTCAAACGGTCTTTCGGGCCGTCAGAACTCGTACGATTGACCCTAAGCCTCTATATATGTACTTCATAAGCAGGTCCACCCCGCTTCTGTCAAGAGACTTGACGGCTGGCTCAATATCACttgacttaaatgatgtcaaCACTCTCAGCACTATTGCCAGAGCCCCTCACCTTTATTGCTGGATTCTTAGTGTTGAGAGGAGGGTTCCGCAGAGCAAGCTGAAAAGCTGTCATCGTGTCTCCTATCCTGATGAGGTTGTCTATCTCCGTGGCGTCCGGTCCCTGATTATCGACAGCCTCATCGTGGTCATCAACGAATTTGTTCTCATCAAATTCATCTATGTCGAGTTTCCTGAATCGCGACGAAAGAGTGTTTTTCGCCATCAGAaatagtagctagcaagctaaagcTAGTCCTACACACAGCGCTGTTGCGTCAACGCGAGCCAAGTACAGGGTACTTGCTCTGGATCGGTTCTCCTGCTATCTAGCAACCACCGTCTTCGCTAACGGTGTTCTGATTGTAATTTGTCTAGATAATATTATCTGCCAGTGTTACACACATTATTTCACCACCATGTACCTAGCTAACTCGTTTGACACGCAATAGTGTTGCCTAAATTATTTTCACTCAGGTGAAGCCAGCGGCACCTGT
>TU2450292
TGCCAATGTTTTCTAAGGTCGATTGCATGGCTGTGGGCTTAatttcatacacctgtcagcaacgggtgtggctgaaatagtcgaataaactcatttgaagggatgtccacatacttttgtatatatcgtGTACCTTCCCACAAAGTTACATGAATTTCAGATGAAAGTCTTGGCCCCTCACCTTTATTGCTGGATTCTTAGTGTTGAGAGGAGGGTTCCGCAGAGCAAGCTGAAAAGCTGTCATCGTGTCTCCTATCCTGATGAGGTTGTCTATCTCCGTGGCGTCCGGTCCCTGATTATCGACAGCCTCATCGTGGTCATCAACGAATTTGTTCTCATCAAATTCATCTATGTCGAGTTTCCTGAATCGCGACGAAAGAGTGTTTTTCGCCATCAGAaatagtagctagcaagctaaagcTAGTCCTACACACAGCGCTGTTGCGTCAACGCGAGCCAAGTACAGGGTACTTGCTCTGGATCGGTTCTCCTGCTATCTAGCAACCACCGTCTTCGCTAACGGTGTTCTGATTGTAATTTGTCTAGATAATATTATCTGCCAGTGTTACACACATTATTTCACCACCATGTACCTAGCTAACTCGTTTGACACGCAATAGTGTTGCCTAAATTATTTTCACTCAGGTGAAGCCAGCGGCACCTGT

Function

NR:

description
actin-related protein 2/3 complex subunit 5-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2450293 False 1255 TUCP 0.43 4 3318949 3324094
TU2450292 True 665 lncRNA 0.45 2 3321758 3324094

Neighbor

gene id symbol gene type direction distance location
LOC110509524 LOC106562843 coding upstream 10584 3292190 ~ 3311174 (+)
LOC118945358 LOC106570398 coding upstream 34159 3274408 ~ 3287599 (+)
LOC110509523 ppp6c coding upstream 60691 3236810 ~ 3261067 (+)
LOC110509522 gstt2b coding upstream 151122 3165311 ~ 3170636 (+)
LOC110509521 LOC100195713 coding upstream 179396 3088039 ~ 3142362 (+)
LOC118945361 NA coding downstream 220953 3545047 ~ 3555150 (+)
LOC110509527 NA coding downstream 381652 3705668 ~ 3731529 (+)
LOC110509530 LOC106562884 coding downstream 798312 4122406 ~ 4124726 (+)
LOC110509300 NA coding downstream 846008 4170102 ~ 4207105 (+)
LOC110509532 LOC106562866 coding downstream 1150540 4474634 ~ 4485633 (+)
G2142365 NA non-coding upstream 67127 3252586 ~ 3254631 (+)
G2142235 NA non-coding upstream 226346 3093789 ~ 3095412 (+)
G2142280 NA non-coding upstream 236311 3085237 ~ 3085447 (+)
G2142278 NA non-coding upstream 236962 3084440 ~ 3084796 (+)
G2142276 NA non-coding upstream 238794 3082715 ~ 3082964 (+)
G2142440 NA non-coding downstream 74996 3399090 ~ 3401178 (+)
G2142441 NA non-coding downstream 75628 3399722 ~ 3401689 (+)
G2142533 NA non-coding downstream 217088 3541182 ~ 3541398 (+)
G2142543 NA non-coding downstream 236060 3560154 ~ 3560397 (+)
G2142546 NA non-coding downstream 239802 3563896 ~ 3564120 (+)
G2142277 NA other upstream 238187 3083217 ~ 3083571 (+)
LOC110509554 LOC105007341 other upstream 1380767 1935597 ~ 1941376 (+)
LOC110509295 LOC106562719 other upstream 1743199 1572502 ~ 1618684 (+)
LOC110509506 LOC106562870 other upstream 1892024 1271496 ~ 1429741 (+)
G2139520 LOC106562868 other upstream 2467971 852249 ~ 853787 (+)
G2144385 NA other downstream 1703657 5027751 ~ 5028239 (+)
G2144416 NA other downstream 1711095 5035189 ~ 5035913 (+)
G2144756 NA other downstream 1959767 5283861 ~ 5284603 (+)
G2144802 NA other downstream 2035892 5359986 ~ 5375497 (+)
LOC110509544 LOC106562892 other downstream 2281955 5605462 ~ 5611062 (+)

Expression


Co-expression Network