G2142543


Basic Information

Item Value
gene id G2142543
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 3560154 ~ 3560397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2450464
GTTGAGGAATCGATCCAGCCAagggtagctagctagcccaggtcctgggagaaagagagagaaggagagagggaagaaggagaggaggactacAGATATTCAAGCTAACTCGTTATGTCCCGGGTTTATTGGAACACAGCACGACTCCAGTTCAGCACCAAAATTAGTTATTGATCTCTCCCCCCAGCTCAGGGACCGCCAACTCCCATCTGCTGATTCATTCTCTTTTTAATTTGTCCCCccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2450464 True 244 lncRNA 0.50 1 3560154 3560397

Neighbor

gene id symbol gene type direction distance location
LOC118945361 NA coding upstream 5004 3545047 ~ 3555150 (+)
LOC118945281 NA coding upstream 191728 3322159 ~ 3368426 (+)
LOC110509524 LOC106562843 coding upstream 248980 3292190 ~ 3311174 (+)
LOC118945358 LOC106570398 coding upstream 272555 3274408 ~ 3287599 (+)
LOC110509523 ppp6c coding upstream 299087 3236810 ~ 3261067 (+)
LOC110509527 NA coding downstream 145349 3705668 ~ 3731529 (+)
LOC110509530 LOC106562884 coding downstream 562009 4122406 ~ 4124726 (+)
LOC110509300 NA coding downstream 609705 4170102 ~ 4207105 (+)
LOC110509532 LOC106562866 coding downstream 914237 4474634 ~ 4485633 (+)
LOC110509354 pde4d coding downstream 1185953 4746350 ~ 4777161 (+)
G2142533 NA non-coding upstream 18756 3541182 ~ 3541398 (+)
G2142441 NA non-coding upstream 158465 3399722 ~ 3401689 (+)
G2142440 NA non-coding upstream 158976 3399090 ~ 3401178 (+)
G2142386 LOC106562824 non-coding upstream 236060 3318949 ~ 3324094 (+)
G2142365 NA non-coding upstream 305523 3252586 ~ 3254631 (+)
G2142546 NA non-coding downstream 3499 3563896 ~ 3564120 (+)
G2142548 NA non-coding downstream 6211 3566608 ~ 3566822 (+)
G2142555 NA non-coding downstream 12147 3572544 ~ 3572791 (+)
G2142572 NA non-coding downstream 36975 3597372 ~ 3597630 (+)
G2142574 NA non-coding downstream 39090 3599487 ~ 3600140 (+)
G2142277 NA other upstream 476583 3083217 ~ 3083571 (+)
LOC110509554 LOC105007341 other upstream 1619163 1935597 ~ 1941376 (+)
LOC110509295 LOC106562719 other upstream 1981595 1572502 ~ 1618684 (+)
LOC110509506 LOC106562870 other upstream 2130420 1271496 ~ 1429741 (+)
G2144385 NA other downstream 1467354 5027751 ~ 5028239 (+)
G2144416 NA other downstream 1474792 5035189 ~ 5035913 (+)
G2144756 NA other downstream 1723464 5283861 ~ 5284603 (+)
G2144802 NA other downstream 1799589 5359986 ~ 5375497 (+)
LOC110509544 LOC106562892 other downstream 2045652 5605462 ~ 5611062 (+)

Expression


Co-expression Network