G2144086 (LOC106583873)


Basic Information

Item Value
gene id G2144086
gene name LOC106583873
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 4576508 ~ 4577228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2452094
AAAATCTTTGAAGTGTGGAACCTTTCCAAGAAATCAGACCCTCTTTTTAAAGAGTACATCAAGACCTTCTTGAGATGCAAGCAAATGGCTTCAGGCTATCCTGCATCGGTCACAGACCAAGAGAGCAAAGACAGGTACATTCAAGACTATCACGACAGAGAAGGCATACTTCTTGACCCTGACAGAATAGAGGTCAACAAAACCAAATGAAATGTGTCGAAATTGTACTTAAATTCGCTTTGGGGCAAATTATCGCAGAGATGTAATATGCTAACAACGTCGATTATTAAAGACCCCGAAGAATTTTGGGAATTTGTTTTTTCTGAGATTTTGAGTTCCTACAAACAGATTGGGAtaaaaaaaaactcacaaaaAGATTCAGGGTAGTCTATGACAAGAGACTGCTTTTGCCTGACGGGACCACATTGCCCTTAGGCTACTGACTTATGCTACATGCCGCAGTGTGTCAGGCGtgactcaaaactatgaaaatgccCCGCGTGTAAAACTTGGAATCAATCACACGCTTGGTCAAGGGGTTCCTAAATGGCAGGAATAGTGACATGGAGATTTTGAGCTCCTACAAAAAGATTGTTAGGGATAAAAAAGGGCTTCCATCTGAGGAAGGCCCCACTTACTAAAAGATTCAGAGTTGTCTATGACAAGAGACTGCTTTTGCCTGACGGGACCACATTGTCCCTTTGGCTACTGACTTATGCTA

Function

NR:

description
uncharacterized protein LOC110531741

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2452094 True 721 lncRNA 0.42 1 4576508 4577228

Neighbor

gene id symbol gene type direction distance location
LOC110509531 LOC106570883 coding downstream 145829 4208866 ~ 4430679 (-)
LOC118945302 NA coding downstream 347314 4225423 ~ 4229194 (-)
LOC110509299 ptpa coding downstream 417617 4148460 ~ 4158891 (-)
LOC110509529 NA coding downstream 514028 4044281 ~ 4062480 (-)
LOC110509526 LOC106562882 coding downstream 1101081 3449799 ~ 3475427 (-)
LOC110509302 psmb7 coding upstream 43171 4620399 ~ 4636327 (-)
LOC110509533 LOC106562887 coding upstream 108296 4685524 ~ 4690341 (-)
LOC110509534 LOC105021738 coding upstream 244965 4822193 ~ 4852134 (-)
LOC110509535 purg coding upstream 289482 4866710 ~ 4871169 (-)
LOC110509538 LOC106562893 coding upstream 491371 5068599 ~ 5124878 (-)
G2144072 NA non-coding downstream 9883 4566406 ~ 4566625 (-)
G2144064 NA non-coding downstream 15246 4560673 ~ 4561262 (-)
G2143834 NA non-coding downstream 378718 4194829 ~ 4197790 (-)
G2144098 NA non-coding upstream 12146 4589374 ~ 4589685 (-)
G2144151 NA non-coding upstream 67746 4644974 ~ 4645334 (-)
G2144156 NA non-coding upstream 87535 4664763 ~ 4664999 (-)
G2144176 NA non-coding upstream 101504 4678732 ~ 4680595 (-)
G2143134 NA other downstream 941268 3628165 ~ 3635240 (-)
LOC110509525 LOC106562824 other downstream 1252412 3317596 ~ 3324117 (-)
G2141289 LOC100380853 other downstream 2926777 1649299 ~ 1649731 (-)
G2141258 NA other downstream 2963299 1598021 ~ 1613209 (-)
G2144911 NA other upstream 637855 5215083 ~ 5226311 (-)
G2145316 opi-1 other upstream 1064248 5641476 ~ 5672690 (-)
G2145335 NA other upstream 1172458 5749686 ~ 5755666 (-)
G2145511 NA other upstream 1229837 5807065 ~ 5807624 (-)
G2145604 NA other upstream 1523543 6100771 ~ 6108752 (-)

Expression


Co-expression Network