G2144176


Basic Information

Item Value
gene id G2144176
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 4678732 ~ 4680595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2452186
agCACGCGTTAATGGATTTTGAATTTAAGATATGATCCTTGTAGAATGAACGTTAAATCCTACAATGTTTTGTAAAAAAAGGTGACAATTGGTACTGATACCACCACAACGAGGAATATGCCACAATCTGTTCACCAATAGCTTTCTAGGTATTGTTAAAGAAAATTCAAGTGGACAGTCTAAGATTTTGCACTAGTTGCTACTTTTGTGACTATGTATTACGGGTGCCCTGGGAAATAAAGAGCAAACTATCTTCATTTTGAGGATAAACAAACATAATGATTGAACTACAGGACCAACTGAATTTGTTTGGGAAGATGTTTCTGCTTTTGCTTCCTTATATTAGTGATGACATTTTGTAGTATACTGAATAATACGATACTACACCTATTAGTATCCCTTGATCAGGTTCCATGatcaaacatgtttttagaaatgtttgcaaatgtattgaaaatgaaatgagatgcagaaatatgtaatttacataagtattcacacccctgagtcaatccaCGTTAGAATCACggttgacagtgattacagctgtgagtctttcttggtaaatctctaagagctctgcacacctagattgtacaatatttgcacgtttttcttaaaaaaatattcaagctctgtcaagttggttgttgatcattgctagacaacaattgtcatttcttgccatagattttcaagtagatttaagtcaaaactgtaactaggccgctcaggaacattcaatgtcatcttagtAAGCATCTCCAGTGTCTGTTCAGCCTTTTGTTTttcggttattgtcctgctgtaagGTGAAAAGAACCTGGACCAACAAAGGTATTGCAAGTGTCTGGAACAGGtcatttttcattatttttcaGGATTCTTGATTACTAGTATGcaaattgtatttttgtattgGCTGCTAACGAAACAAAAGACAATCATTTTAGAGTGACAGTCTTTTTCATGTGAAAGCTAACATTGGAGCATTTGATTCAAAGTAGGACATCTATGTCTACTGTATGCGGTACAAAATATGGTATCTGAAATGATGCTACGGTATTTGCTTCCACATTTATCAGAAGTTCTGTAGGTTATCTGGAGAAGTGTAATCTAATTATCAATTGAAAATAAATTCCTCGGAATGATAGGCCTAGGTACTGTTAAATCAAATTAAAGTGAACAGTCTGAGATTTAGCACTAGTTAGTTGCTACTTTTGTGACTGTATTACAGGTGTCCTGGGAAAATAAAGAGCAAGCTGACTTCATTTTTGAGGATAAAAAACAATGATTAAGCAATAGGACCAATTGAGCTTGTTTGGGAAGATGTTTCTGCTTCCGTGTCCATTATATTAGCGGTGAAACTAAAACTACCTCACATAAATTAGCATGTGTCTTTAAATTTTTACTATCTAACAAAAGTTGCTCCCATTTTTCCAGAACTCTTTCCTAAAACTTTCTTTGTCACCATTTTCGATATTTTCTTCTTATAGAAGAACTTGGAATGTTTTGTACAAACAAAATGTTTTCAGCAATAAATGTTTGCTCCCTGTGTAACATTTCATAGGTGATGTTGTTTGGAAATCTCTACTTCACTAGGTTAAATTAATTATTTCAATGATATTACCTGTGGACTATTTCTCTTATGCTGTGTGAATGTTGATACCACAGCACTGAGTTTACCACGGCAAAAAGAAAACACAAAGCAGACTGAACTCTATGGTCCTTtaaaaaacctgctgtatgtaaaatattgtgtgatGTAGCTTGGGAATAAACAAATGTGACTCTAGGT

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2452186 True 1798 lncRNA 0.34 2 4678732 4680595

Neighbor

gene id symbol gene type direction distance location
LOC110509302 psmb7 coding downstream 55296 4620399 ~ 4636327 (-)
LOC110509531 LOC106570883 coding downstream 248053 4208866 ~ 4430679 (-)
LOC118945302 NA coding downstream 449538 4225423 ~ 4229194 (-)
LOC110509299 ptpa coding downstream 519841 4148460 ~ 4158891 (-)
LOC110509529 NA coding downstream 616252 4044281 ~ 4062480 (-)
LOC110509533 LOC106562887 coding upstream 4929 4685524 ~ 4690341 (-)
LOC110509534 LOC105021738 coding upstream 141598 4822193 ~ 4852134 (-)
LOC110509535 purg coding upstream 186115 4866710 ~ 4871169 (-)
LOC110509538 LOC106562893 coding upstream 388004 5068599 ~ 5124878 (-)
LOC110509542 fbxw2 coding upstream 834296 5514891 ~ 5523585 (-)
G2144156 NA non-coding downstream 13733 4664763 ~ 4664999 (-)
G2144151 NA non-coding downstream 33398 4644974 ~ 4645334 (-)
G2144098 NA non-coding downstream 89047 4589374 ~ 4589685 (-)
G2144086 LOC106583873 non-coding downstream 101504 4576508 ~ 4577228 (-)
G2144189 NA non-coding upstream 18027 4698622 ~ 4698927 (-)
G2144211 NA non-coding upstream 42889 4723484 ~ 4723886 (-)
G2144212 NA non-coding upstream 43553 4724148 ~ 4724474 (-)
G2144224 NA non-coding upstream 50950 4731545 ~ 4731766 (-)
G2144225 NA non-coding upstream 51995 4732590 ~ 4732872 (-)
G2143134 NA other downstream 1043492 3628165 ~ 3635240 (-)
LOC110509525 LOC106562824 other downstream 1354636 3317596 ~ 3324117 (-)
G2141289 LOC100380853 other downstream 3029001 1649299 ~ 1649731 (-)
G2141258 NA other downstream 3065523 1598021 ~ 1613209 (-)
G2144911 NA other upstream 534488 5215083 ~ 5226311 (-)
G2145316 opi-1 other upstream 960881 5641476 ~ 5672690 (-)
G2145335 NA other upstream 1069091 5749686 ~ 5755666 (-)
G2145511 NA other upstream 1126470 5807065 ~ 5807624 (-)
G2145604 NA other upstream 1420176 6100771 ~ 6108752 (-)

Expression


Co-expression Network