G2144510 (LOC106562892)


Basic Information

Item Value
gene id G2144510
gene name LOC106562892
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 4953441 ~ 4954009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2452535
TTAGGGAGAACAACGTCATTAGATTCCACAGTAGTTTGGGTGTAGGGGGTTGGTGTTCCCTTTTTCACTGGTTTTGGGGTGTTAGGGGGTCCAGGTTGCGTGGGCGGGTCTGTGGGGTACATCAATGCAGAAGTAGGGCTGTACTGAGTCACCCTGGGGGACTGGGGTACAAAGGGTCCTCCGGTGGGTTTCCCCTCTAATATGACCTCAGGTTGTCCTGTGGTGGTGGTCGTCggcatggggacaggggaggggtaGGGAAAAGACACTGGCAGATCCCGTGTGGGGTCAGAAATGATGATGAAGGGGTTTTGTTCCATGCGATCAGGGTCCAGGTGGGTGGGCGGCTCATACTCAAAGATTTTGTCCACAAAGACCCACTTGAGGCCGACGGTGCAGAGGGCCAGGCTGAGCAGGCAGGCCAGGATGGGGAGGATGCAGATCTTCTCCGAGCGCAGGCAACTGCGCACCTGTTCAATCTCTATGCACACACAGCAGGTCCCTGCCAAGCCCAATAATCCCAGGGGCCCGGCTCGACCGCCATCGCAATTGTCCCCGCCTCCCTCGGT

Function

NR:

description
pro-neuregulin-1, membrane-bound isoform-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2452535 True 569 lncRNA 0.58 1 4953441 4954009
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110509535 purg coding downstream 82272 4866710 ~ 4871169 (-)
LOC110509534 LOC105021738 coding downstream 101307 4822193 ~ 4852134 (-)
LOC110509533 LOC106562887 coding downstream 263100 4685524 ~ 4690341 (-)
LOC110509302 psmb7 coding downstream 330005 4620399 ~ 4636327 (-)
LOC110509531 LOC106570883 coding downstream 522762 4208866 ~ 4430679 (-)
LOC110509538 LOC106562893 coding upstream 114590 5068599 ~ 5124878 (-)
LOC110509542 fbxw2 coding upstream 560882 5514891 ~ 5523585 (-)
LOC118945317 NA coding upstream 687443 5641452 ~ 5641777 (-)
LOC118945316 NA coding upstream 687842 5641851 ~ 5643016 (-)
opi-1 opi-1 coding upstream 702577 5656586 ~ 5658119 (-)
G2144448 NA non-coding downstream 100426 4852691 ~ 4853015 (-)
G2144440 NA non-coding downstream 109545 4843371 ~ 4843896 (-)
G2144300 NA non-coding downstream 132765 4820461 ~ 4820676 (-)
G2144295 NA non-coding downstream 158166 4794692 ~ 4795275 (-)
G2144225 NA non-coding downstream 220569 4732590 ~ 4732872 (-)
G2144544 NA non-coding upstream 51982 5005991 ~ 5006226 (-)
G2144548 NA non-coding upstream 56728 5010737 ~ 5010988 (-)
G2144550 NA non-coding upstream 58036 5012045 ~ 5012492 (-)
G2144552 NA non-coding upstream 60636 5014645 ~ 5015479 (-)
G2144555 NA non-coding upstream 65271 5019280 ~ 5019543 (-)
G2143134 NA other downstream 1318201 3628165 ~ 3635240 (-)
LOC110509525 LOC106562824 other downstream 1629345 3317596 ~ 3324117 (-)
G2141289 LOC100380853 other downstream 3303710 1649299 ~ 1649731 (-)
G2141258 NA other downstream 3340232 1598021 ~ 1613209 (-)
G2144911 NA other upstream 261074 5215083 ~ 5226311 (-)
G2145316 opi-1 other upstream 687467 5641476 ~ 5672690 (-)
G2145335 NA other upstream 795677 5749686 ~ 5755666 (-)
G2145511 NA other upstream 853056 5807065 ~ 5807624 (-)
G2145604 NA other upstream 1146762 6100771 ~ 6108752 (-)

Expression

G2144510(LOC106562892) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: -0.5 to 0.5.
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G2144510(LOC106562892) Expression in each Bioproject

Bar chart with 2 bars.
G2144510(LOC106562892) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Co-expression Network