G2144552


Basic Information

Item Value
gene id G2144552
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 5014645 ~ 5015479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2452577
gtctcacaactcaatcgctggttgaaaactgttttctgcccctcccaaaagatagaatttgtagataattggccctctttctgggactcacccacaaacaggaccaagcctggcctgttgaggagtgacggactccatcctagctggaagggtgctctcatcttatctaccaacatagacagggctctaactcccctagctccacaatgaaatagggtgcaggccaggcagcaggctgttagccagcctgccagcttagtggagtctgccactagcacagtcactgtagtcagctcagctatccccattgagaccatatctgtgcctcgacctaggttgggcaaaactaaacatggcggtgttcgccttagcaatctcactagaataaagacctcctccattcctgccattattgaaagagattgtgatacctcacatctcaaaatagggctacttaatgttagatccctcacttccaaggcagttatagtcaatgaactaatcactgatcataatcttgatgtgattggcctgactgaaacatgactTAAGCCTGATGAATATACTGTGTTAattgaggcctcacctcctggatacactagtgaccatatcccccgcacatcccgcaaaggtggagatgttgctaacatttacgatagcaaatttcaatttacaaaaaaattgaGCTTCtggtcatgaaatctatgcagcctactcaaacacTTTTTATAGGTACAGCTAAGaagcctcctgggccatatacagcgttcctcactgagttccctgaattcctatcggaccttgtagtcatagcacataatattctaatttttgg

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2452577 True 835 lncRNA 0.45 1 5014645 5015479
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110509535 purg coding downstream 143476 4866710 ~ 4871169 (-)
LOC110509534 LOC105021738 coding downstream 162511 4822193 ~ 4852134 (-)
LOC110509533 LOC106562887 coding downstream 324304 4685524 ~ 4690341 (-)
LOC110509302 psmb7 coding downstream 391209 4620399 ~ 4636327 (-)
LOC118945302 NA coding downstream 785451 4225423 ~ 4229194 (-)
LOC110509538 LOC106562893 coding upstream 53120 5068599 ~ 5124878 (-)
LOC110509542 fbxw2 coding upstream 499412 5514891 ~ 5523585 (-)
LOC118945317 NA coding upstream 625973 5641452 ~ 5641777 (-)
LOC118945316 NA coding upstream 626372 5641851 ~ 5643016 (-)
opi-1 opi-1 coding upstream 641107 5656586 ~ 5658119 (-)
G2144550 NA non-coding downstream 2153 5012045 ~ 5012492 (-)
G2144548 NA non-coding downstream 3657 5010737 ~ 5010988 (-)
G2144544 NA non-coding downstream 8419 5005991 ~ 5006226 (-)
G2144510 LOC106562892 non-coding downstream 60636 4953441 ~ 4954009 (-)
G2144448 NA non-coding downstream 161630 4852691 ~ 4853015 (-)
G2144555 NA non-coding upstream 3801 5019280 ~ 5019543 (-)
G2144556 LOC106562892 non-coding upstream 4775 5020254 ~ 5021562 (-)
G2144558 NA non-coding upstream 10731 5026210 ~ 5027176 (-)
G2144559 NA non-coding upstream 11748 5027227 ~ 5028359 (-)
G2144560 NA non-coding upstream 13082 5028561 ~ 5029048 (-)
LOC110509531 LOC106570883 other downstream 584109 4208866 ~ 4430679 (-)
G2143134 NA other downstream 1379405 3628165 ~ 3635240 (-)
LOC110509525 LOC106562824 other downstream 1690549 3317596 ~ 3324117 (-)
G2141289 LOC100380853 other downstream 3364914 1649299 ~ 1649731 (-)
G2141258 NA other downstream 3401436 1598021 ~ 1613209 (-)
G2144911 NA other upstream 199604 5215083 ~ 5226311 (-)
G2145316 opi-1 other upstream 625997 5641476 ~ 5672690 (-)
G2145335 NA other upstream 734207 5749686 ~ 5755666 (-)
G2145511 NA other upstream 791586 5807065 ~ 5807624 (-)
G2145604 NA other upstream 1085292 6100771 ~ 6108752 (-)

Expression

G2144552 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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G2144552 Expression in each Bioproject

Bar chart with 20 bars.
G2144552 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
End of interactive chart.

Co-expression Network