G2144556 (LOC106562892)


Basic Information

Item Value
gene id G2144556
gene name LOC106562892
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 5020254 ~ 5021562 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2452582
AAGTGAGTATGGAAATCTTGAAATAGTGTATAAAATGTTGGTGCTGTGTTAGGTGAACACTAAATACTTTGTTGTATGCACCTCTGTAAGTAGACTATGACTGCATTCATGTAAATGGGGAGAAATGACATGCACTTGAACACATAAGCAATATCGCAGATTCAGTAGAATACCATTGTATTGAGCTTACAGTGAGTAGTTCATACAGGTATATAGGTAATCCATAGTGCTGGTGGATTCTTTTGTTTTAAGGGTCAGGTAGCAACGCCAACAGCGAGAAGAAAATTATGAATATATGGACCAGAGTCATGATGCAGTTCCCTTAAGCACATCAAATGGAAATTAAAGGCACCATTAATATTTTTCTCCATTGAAATACTCTGAACCATTGGTATATAGTAGTGTATATGGCACTTTCTTTCATGACATGAGCATGTTTGTACACATTTCTAtttatttataaaatattttttcactACTTTGCTAAAATAAACgttgtctttctttttttttgcaaatatttAATTTATAGAAAATAAAAGTTTAGTGGTgactattatttatttttgaagTATTTTAAGTATTTTTCTAAgcaatatttacatttttgacatTATACAGCAATTGGATCTTGGTTGGCGATGATGCTGGATAACCTGGCTTGCAGGTCATCCTGTGGGGAGAGTCGGAGTGCTGGGTAAGTTCTGCAGCTGTCTGTGAGTGGCTCCACACCTGCAGCCATGTAATCCTGTAAACTCAGGAAGGGCGTGTCCTCTCCCACGCAACAGTCCTCCTCCGTGTCGCTCTCCGAGCTGCTCCTCGCCGTACTGCTGACTCGGTCGTTGGACTCCGTTTTGTGGCCCGCCGTGTGGCCATTGGGCTTTGTGCTATTGGCACAGCGGCCATTGTTGTTGTTTGTGAGTTTTTTAGGGAGGCTTTGCGGGGGAACGGTTGGTACCACAACCGTGGCGGCGACCGCCTCGTACTCCTGCGTTGTCTCGTAGTTGTCGTTCTCGACCATCCTCAGCGGGCTGGGCGGGGGGCTGTGGGCCTTATGGCCATAGTTGTAGTGGGCACAGTTCCTTTTGGACTGGCTGTGGTGGTGGTCGGGGCGCGGCGGCTTGTCACGGGGCCACAGCGTGGTGGTGAACAGCAGGGGGTCCTCCTCTTCGCCAGTGGGGCTGACTGCCACCGAGGGGACTGAGGTGGCCAGGCTGGACAGTGGGGCCGAGATCTCAGAAGGAGGGGAGGCCGGGGTCACGGGAGAGAGCAACTCCACAGGAGACAGGCGCGTTGGGGTGGTCATTGC
>TU2452584
tttgaagTATTTTAAGTATTTTTCTAAgcaatatttacatttttgacatTATACAGCAATTGGATCTTGGTTGGCGATGATGCTGGATAACCTGGCTTGCAGGTCATCCTGTGGGGAGAGTCGGAGTGCTGGGTAAGTTCTGCAGCTGTCTGTGAGTGGCTCCACACCTGCAGCCATGTAATCCTGTAAACTCAGGAAGGGCGTGTCCTCTCCCACGCAACAGTCCTCCTCCGTGTCGCTCTCCGAGCTGCTCCTCGCCGTACTGCTGACTCGGTCGTTGGACTCCGTTTTGTGGCCCGCCGTGTGGCCATTGGGCTTTGTGCTATTGGCACAGCGGCCATTGTTGTTGTTTGTGAGTTTTTTAGGGAGGCTTTGCGGGGGAACGGTTGGTACCACAACCGTGGCGGCGACCGCCTCGTACTCCTGCGTTGTCTCGTAGTTGTCGTTCTCGACCATCCTCAGCGGGCTGGGCGGGGGGCTGTGGGCCTTATGGCCATAGTTGTAGTGGGCACAGTTCCTTTTGGACTGGCTGTGGTGGTGGTCGGGGCGCGGCGGCTTGTCACGGGGCCACAGCGTGGTGGTGAACAGCAGGGGGTCCTCCTCTTCGCCAGTGGGGCTGACTGCCACCGAGGGGACTGAGGTGGCCAGGCTGGACAGTGGGGCCGAGATCTCAGAAGGAGGGGAGGCCGGGGTCACGGGAGAGAGCAACTCCACAGGAGACAGGCGCGTTGGGGTGGTCATTGC
>TU2452583
AAGTGAGTATGGAAATCTTGAAATAGTGTATAAAATGTTGGTGCTGTGTTAGGTGAACACTAAATACTTTGTTGTATGCACCTCTGTAAGTAGACTATGACTGCATTCATGTAAATGGGGAGAAATGACATGCACTTGAACACATAAGCAATATCGCAGATTCAGTAGAATACCATTGTATTGAGCTTACAGTGAGTAGTTCATACAGGTATATAGGTAATCCATAGTGCTGGTGGATTCTTTTGTTTTAAGGGTCAGGTAGCAACGCCAACAGCGAGAAGAAAATTATGAATATATGGACCAGAGTCATGATGCAGTTCCCTTAAGCACATCAAATGGAAATTAAAGGCACCATTAATATTTTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2452582 False 1309 lncRNA 0.47 1 5020254 5021562
TU2452584 False 744 lncRNA 0.58 1 5020254 5020997
TU2452583 True 367 lncRNA 0.37 1 5021196 5021562
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110509535 purg coding downstream 149085 4866710 ~ 4871169 (-)
LOC110509534 LOC105021738 coding downstream 168120 4822193 ~ 4852134 (-)
LOC110509533 LOC106562887 coding downstream 329913 4685524 ~ 4690341 (-)
LOC110509302 psmb7 coding downstream 396818 4620399 ~ 4636327 (-)
LOC118945302 NA coding downstream 791060 4225423 ~ 4229194 (-)
LOC110509538 LOC106562893 coding upstream 47037 5068599 ~ 5124878 (-)
LOC110509542 fbxw2 coding upstream 493329 5514891 ~ 5523585 (-)
LOC118945317 NA coding upstream 619890 5641452 ~ 5641777 (-)
LOC118945316 NA coding upstream 620289 5641851 ~ 5643016 (-)
opi-1 opi-1 coding upstream 635024 5656586 ~ 5658119 (-)
G2144555 NA non-coding downstream 711 5019280 ~ 5019543 (-)
G2144552 NA non-coding downstream 4775 5014645 ~ 5015479 (-)
G2144550 NA non-coding downstream 7762 5012045 ~ 5012492 (-)
G2144548 NA non-coding downstream 9266 5010737 ~ 5010988 (-)
G2144544 NA non-coding downstream 14028 5005991 ~ 5006226 (-)
G2144558 NA non-coding upstream 4648 5026210 ~ 5027176 (-)
G2144559 NA non-coding upstream 5665 5027227 ~ 5028359 (-)
G2144560 NA non-coding upstream 6999 5028561 ~ 5029048 (-)
G2144561 NA non-coding upstream 7539 5029101 ~ 5029497 (-)
G2144562 NA non-coding upstream 7990 5029552 ~ 5029764 (-)
LOC110509531 LOC106570883 other downstream 589718 4208866 ~ 4430679 (-)
G2143134 NA other downstream 1385014 3628165 ~ 3635240 (-)
LOC110509525 LOC106562824 other downstream 1696158 3317596 ~ 3324117 (-)
G2141289 LOC100380853 other downstream 3370523 1649299 ~ 1649731 (-)
G2141258 NA other downstream 3407045 1598021 ~ 1613209 (-)
G2144911 NA other upstream 193521 5215083 ~ 5226311 (-)
G2145316 opi-1 other upstream 619914 5641476 ~ 5672690 (-)
G2145335 NA other upstream 728124 5749686 ~ 5755666 (-)
G2145511 NA other upstream 785503 5807065 ~ 5807624 (-)
G2145604 NA other upstream 1079209 6100771 ~ 6108752 (-)

Expression

G2144556(LOC106562892) Expression in all Baseline Samples

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G2144556(LOC106562892) Expression in each Bioproject

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G2144556(LOC106562892) Expression in each Sample
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Co-expression Network