XLOC_004045 (CR550302.1)


Basic Information

Item Value
gene id XLOC_004045
gene name CR550302.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 15018138 ~ 15019527 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007715
ACGACTTTTTCAAGGCGTTCAGATTTGCGTGCACTAATCCACGTCGTATCCGTATAAACTCGTGAAAGAGAAAGCGAGAAATCTCCTACTGATTCTGTCCACATTCTGAAGTGTTCATCAGATGGGTACATCTCTCACAGGAGGCCACGAAAAACCATACGGcaagatgataaaaaaaaaagttacataactGACGTTACAAGCGCAACTTTAAATAAATGGCAGGtttaataaatcttaatttaaattaatattttattacataagaTATCCTTGTCAAATTTCACCTAATTTGTTGTTACCTTTATTGTGTAACATTTTTCATTTACTTGTAGAACATGCTTAAAGTTAGTTTTCCAGTCTTGTTTgattatataatcatatattcttcaaaagaaaatctattacatttgttctctttttgcTGTTTATGTTAATTGTTAAGATACAGCAATGTTTCCCTAAGCCTGTATGAAATTTTTATTTCtgcataataatgattaataataattgttattgataACAATcccataataatacaaataaaatagcagGGACAGAAGCAATAACACCTAATACCATCAGTAACTTGATAACCCTACCTGATAGCCTTTCTAATGTTGGCACATTGGTACATCTGCACAAAGATGTTGGACAGCTGCTTGAAAATCTTGCTTTAGAGAAATTTTACACTCGAAAAATACAAAACCCCATGTTCTGCTGCATGCTGGACTTCAATTGTTTTTGCCATCACATCCCTCAGTGCTGCAGTCAGACTGGAACAGAGTTGTGAGGTAAGGCTGTCCATGCCTGAGAAACCGATTCATACTAAAGATGAAGAGACCACACCAACATCTGGCTCAGATAAGGACACCCAGGCAGGTGGAGGGATGCAGGGTCTTGTCCACGGCACTACAGCATCTTCAACATTTCCTTCATCAGCACACTGCTGTTCTTTATCATCATCACTGCACACACCAGTCTGAGGACATTTCAGATTATGCAAAGCTTTTAATAAAGAAGTCATTTAACAGC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099691

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007715 True 1035 lncRNA 0.36 2 15018138 15019527

Neighbor

gene id symbol gene type direction distance location
XLOC_004044 elavl1b coding downstream 16426 14955484 ~ 15001712 (-)
XLOC_004043 si:dkey-6d5.1 coding downstream 94000 14915780 ~ 14924138 (-)
XLOC_004042 NA coding downstream 144008 14873329 ~ 14874130 (-)
XLOC_004041 CU019562.1 coding downstream 188814 14827374 ~ 14829324 (-)
XLOC_004040 sgta coding downstream 205075 14771908 ~ 14813063 (-)
XLOC_004046 slc1a8a coding upstream 48780 15068307 ~ 15090564 (-)
XLOC_004047 rpn2 coding upstream 206007 15225534 ~ 15297210 (-)
XLOC_004048 NA coding upstream 291854 15311381 ~ 15313599 (-)
XLOC_004049 ghrh coding upstream 326127 15345654 ~ 15435495 (-)
XLOC_004050 NA coding upstream 737199 15756726 ~ 15761871 (-)
XLOC_004019 CR450764.8 misc downstream 2326447 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 2396371 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 2426842 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 2504876 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 2517876 12499966 ~ 12500262 (-)
XLOC_004063 CR854846.1 misc upstream 1107855 16127382 ~ 16127678 (-)
XLOC_004039 NA non-coding downstream 259050 14754905 ~ 14759088 (-)
XLOC_004038 CR550307.1 non-coding downstream 322274 14693481 ~ 14695864 (-)
XLOC_004036 NA non-coding downstream 585938 14430922 ~ 14432200 (-)
XLOC_004051 FP016142.5 non-coding upstream 755925 15775452 ~ 15780923 (-)
XLOC_004052 FP016142.4 non-coding upstream 776566 15796093 ~ 15797568 (-)
XLOC_004053 FP016142.3 non-coding upstream 778731 15798258 ~ 15799923 (-)

Expression


Co-expression Network