G2145066


Basic Information

Item Value
gene id G2145066
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 5480579 ~ 5483011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2453143
CATATCAATACAAATACAAAGGAGGACGACGTCTCAACATGGCTAGGCCACAAGTTACAGGCAACATCTTTTGGTCTCTTGGACAGAGCACAGTAGTGTCAGGTTTCGGCTAAATAATGACGTTTTGAGGACGTTATGGTATTCCTCTCCTCACACCtatacatagatggaaaaaaaaaacacactcaTGACAAAAATCCCCGCCCACACATTGTGTTATttatatatgtaaatataaatgTAGAGTAACCCGTGTTTTGTTTGTAACATTGTTGCTTTATATAGTAACTGAGGGTTGACTGGTTTACTCACCGATACACAGAACAGATTTGGTAAGTAAGATTGTACCATCTGGGTTCTAAAAAGCTTTTACAATCCCccacccatttaaaaaaaaaggttttacatGCTTTGTACATATTTCAAAGAAATAATTTTATACATGAGTATATTTACACTATATGTGTATATATTCGTTCACAACGCGTAGTCATTCTCTAGATAAAGGACACGGAACGGTGAGATGCAGTCGTGTGGGTGGGAATAGTTGATTGAGCCTGAAATACAAAGCACACTGCACTTGGATTTCCATGTGGGACTGAAATCTAAAATGATGTAGCTTTTAGCAAAAACATTGAACTCGGCACTgtagaagtaaaaaataaaagtaactcTCCGTTTAGTGTTTCAGATTTACATTCAACTGACCCAAACCTCCTGCCTAAAAAGTCATTCATTTTTCTTTTTAGAAATTGCATAAAGGATAAGAACTAGGGAAGAGAGGGGCAATGACGTGGTTGGCCTTAAATGCTATGACCTATAGACAGCGTGTTGGGTAAGGCGTGGGCAATACTGTACATTATAAATGCAAATAACCCTGTTTTGATCCAGTAGCTTTCGGCAGTTATTATAAAACCCTCATTCACAAGTTAAAGAAACAGTTAACATGCCCCTTTGCTTTGGGACATTTCACCCCTGTGAGAAAGGCCCCACATGGTACGCACCACAACTTTAATTCTCCCGGAACAATGGCAAAGTGTGCTGACAGTAGGTTTATGGGCCAGCCTAAATGGTCCAAAAATGAACTGAGGGACCCTTCAAATAAACCATGAATTTTATCCCAATACCTTATTACAGTAGCTCACATAGGTATGTATCAGTGCCCTCTTGAAACATGCTAATCCATATCTTCTATCAACAATTTCCCCTCTTTTGAACACCCAAAAAGAACAGCCACGGAAAGATACTCAGCAAAGTGCCTACTCATcttcacagaccagacagagtgGGAGTCGTTTCTGCATTGAACATAAACGAACAGAGGAGAATTGAGGCTACTAGTCCAATGTACATCAGGGCAAGCAGACAAACAGTCAGACATGTGGGCATGAAGGACTCTGGTCCACTGTTTAGTGGAATACGTAAAAACAGTCTACACCAGAGTATGTCCAGGTACCATTGTCTGAGGCAGAATGAGCTAATGCCACCACTACTGGAGAAAAGACTGACACGAAACAGCACTTTTCTATCAATGGTTGAACCTAAAGCAAGCACAAATTCCAGACTGTTCCATGTAACAGACTAAGGGGGGCTTTCTTGAAATGGAAACAATCAAAATAAAATGGTACATACATATACAGAATTGTTTTTAAAATACTGGATAAAGTAGAGTGACAGTACATTCTTCTTTTTGCAATAATCCTCTATAGCTACATCTGCATTGACCCACTAGTTCAATCATACAGCCAGTACGGCTTATAAGAGAAAGACAATGACAACAATCATTACTTCTAGCATTAAGGCAAAGTCTAATTAGCGGTTGTAAGGGCTAGACCAGTTCCTTCATAGAGTCACTCCAATGTGGGGAACCCGAGGGGCCGTGTCCTAATTTGAGATATGCATAAGTAACTCACTTTCAAGTCTCCTATGGACATCGATACACGAATTCCGCAAAAAAGTTTGAGTAAAATTGGAGCATCTGAAGTTAGGATTCAGACGATAGATTCCAATATGGTGACAGACTTCAATGTGGGGAGCTACTTGAGTCCAAAGGAGACTTGGACTAAGAACTTGTTTTTGGTTGAAACACTTGTTTGTGTTAGCAGCTGTTGTGAGACAACTGGCTCTTTAGCATGGcaaagctaatcagaagctaagcCCCATTCTAGCCAACTGCAGTCTTTTCTGACACAGTGTGGAAATAAGAACCCTAGAACCAATTCTAGACCCGTGGATGCTTTCTGTTAAGAGACAATTCTTCGACATCATCCAATCAACTTTCAGAATTGAAGCAGATTGCATCTAGTATTAAGTAGAGGGTACTGCACTATAAACTGTTTCATTTACACAGCTTAAAGGAAGGCAAACA
>TU2453148
ATAAACATGTACAAAGTATGTTAAAATGTTTGAAAAAAGCATATCTGTGACAGTTAACAGTACAGCATATCAATACAAATACAAAGGAGGACGACGTCTCAACATGGCTAGGCCACAAGTTACAGGCAACATCTTTTGGTCTCTTGGACAGAGCACAGTAGTGTCAGGTTTCGGCTAAATAATGACGTTTTGAGGACGTTATGGTATTCCTCTCCTCACACCtatacatagatggaaaaaaaaaacacactcaTGACAAAAATCCCCGCCCACACATTGTGTTATttatatatgtaaatataaatgTAGAGTAACCCGTGTTTTGTTTGTAACATTGTTGCTTTATATAGTAACTGAGGGTTGACTGGTTTACTCACCGATACACAGAACAGATTTGGTAAGTAAGATTGTACCATCTGGGTTCTAAAAAGCTTTTACAATCCCccacccatttaaaaaaaaaggttttacatGCTTTGTACATATTTCAAAGAAATAATTTTATACATGAGTATATTTACACTATATGTGTATATATTCGTTCACAACGCGTAGTCATTCTCTAGATAAAGGACACGGAACGGTGAGATGCAGTCGTGTGGGTGGGAATAGTTGATTGAGCCTGAAATACAAAGCACACTGCACTTGGATTTCCATGTGGGACTGAAATCTAAAATGATGTAGCTTTTAGCAAAAACATTGAACTCGGCACTgtagaagtaaaaaataaaagtaactcTCCGTTTAGTGTTTCAGATTTACATTCAACTGACCCAAACCTCCTGCCTAAAAAGTCATTCATTTTTCTTTTTAGAAATTGCATAAAGGATAAGAACTAGGGAAGAGAGGGGCAATGACGTGGTTGGCCTTAAATGCTATGACCTATAGACAGCGTGTTGGGTAAGGCGTGGGCAATACTGTACATTATAAATGCAAATAACCCTGTTTTGATCCAGTAGCTTTCGGCAGTTATTATAAAACCCTCATTCACAAGTTAAAGAAACAGTTAACATGCCCCTTTGCTTTGGGACATTTCACCCCTGTGAGAAAGGCCCCACATGGTACGCACCACAACTTTAATTCTCCCGGAACAATGGCAAAGTGTGCTGACAGTAGGTTTATGGGCCAGCCTAAATGGTCCAAAAATGAACTGAGGGACCCTTCAAATAAACCATGAATTTTATCCCAATACCTTATTACAGTAGCTCACATAGGTATGTATCAGTGCCCTCTTGAAACATGCTAATCCATATCTTCTATCAACAATTTCCCCTCTTTTGAACACCCAAAAAGAACAGCCACGGAAAGATACTCAGCAAAGTGCCTACTCATcttcacagaccagacagagtgGGAGTCGTTTCTGCATTGAACATAAACGAACAGAGGAGAATTGAGGCTACTAGTCCAATGTACATCAGGGCAAGCAGACAAACAGTCAGACATGTGGGCATGAAGGACTCTGGTCCACTGTTTAGTGGAATACGTAAAAACAGTCTACACCAGAGTATGTCCAGGTACCATTGTCTGAGGCAGAATGAGCTAATGCCACCACTACTGGAGAAAAGACTGACACGAAACAGCACTTTTCTATCAATGGTTGAACCTAAAGCAAGCACAAATTCCAGACTGTTCCATGTAACAGACTAAGGGGGGCTTTCTTGAAATGGAAACAATCAAAATAAAATGGTACATACATATACAGAATTGTTTTTAAAATACTGGATAAAGTAGAGTGACAGTACATTCTTCTTTTTGCAATAATCCTCTATAGCTACATCTGCATTGACCCACTAGTTCAATCATACAGCCAGTACGGCTTATAAGAGAAAGACAATGACAACAATCATTACTTCTAGCATTAAGGCAAAGTCTAATTAGCGGTTGTAAGGGCTAGACCAGTTCCTTCATAGAGTCACTCCAATGTGGGGAACCCGAGGGGCCGTGTCCTAATTTGAGATATGCATAAGTAACTCACTTTCAAGTCTCCTATGGACATCGATACACGAATTCCGCAAAAAAGTTTGAGTAAAATTGGAGCATCTGAAGTTAGGATTCAGACGATAGATTCCAATATGGTGACAGACTTCAATGTGGGGAGCTACTTGAGTCCAAAGGAGACTTGGACTAAGAACTTGTTTTTGGTTGAAACACTTGTTTGTGTTAGCAGCTGTTGTGAGACAACTGGCTCTTTAGCATGGcaaagctaatcagaagctaagcCCCATTCTAGCCAACTGCAGTCTTTTCTGACACAGTGTGGAAATAAGAACCCTAGAACCAATTCTAGACCCGTGGATGCTTTCTGTTAAGAGACAATTCTTCGACATCATCCAATCAACTTTCAGAATTGAAGCAGATTGCATCTAGTATTAAGTAGAGGGTACTGCACTATAAACTGTTTCATTTACACAGCTTAAAGGAAGGCAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2453143 False 2368 lncRNA 0.40 1 5480579 5482946
TU2453148 True 2433 lncRNA 0.39 1 5480579 5483011

Neighbor

gene id symbol gene type direction distance location
LOC110509538 LOC106562893 coding downstream 355701 5068599 ~ 5124878 (-)
LOC110509535 purg coding downstream 609410 4866710 ~ 4871169 (-)
LOC110509534 LOC105021738 coding downstream 628445 4822193 ~ 4852134 (-)
LOC110509533 LOC106562887 coding downstream 790238 4685524 ~ 4690341 (-)
LOC110509302 psmb7 coding downstream 857143 4620399 ~ 4636327 (-)
LOC110509542 fbxw2 coding upstream 31880 5514891 ~ 5523585 (-)
LOC118945317 NA coding upstream 158441 5641452 ~ 5641777 (-)
LOC118945316 NA coding upstream 158840 5641851 ~ 5643016 (-)
opi-1 opi-1 coding upstream 173575 5656586 ~ 5658119 (-)
LOC110509355 LOC106581842 coding upstream 180218 5663229 ~ 5663766 (-)
G2144981 NA non-coding downstream 124450 5346591 ~ 5356129 (-)
G2144939 NA non-coding downstream 157388 5268404 ~ 5323191 (-)
G2144911 NA non-coding downstream 254268 5215083 ~ 5226311 (-)
G2145068 NA non-coding upstream 3244 5486255 ~ 5486548 (-)
G2145069 NA non-coding upstream 3723 5486734 ~ 5486964 (-)
G2145079 NA non-coding upstream 10701 5493712 ~ 5493927 (-)
G2145119 NA non-coding upstream 43002 5526013 ~ 5526268 (-)
LOC110509531 LOC106570883 other downstream 1050043 4208866 ~ 4430679 (-)
G2143134 NA other downstream 1845339 3628165 ~ 3635240 (-)
LOC110509525 LOC106562824 other downstream 2156483 3317596 ~ 3324117 (-)
G2141289 LOC100380853 other downstream 3830848 1649299 ~ 1649731 (-)
G2145316 opi-1 other upstream 158465 5641476 ~ 5672690 (-)
G2145335 NA other upstream 266675 5749686 ~ 5755666 (-)
G2145511 NA other upstream 324054 5807065 ~ 5807624 (-)
G2145604 NA other upstream 617760 6100771 ~ 6108752 (-)
G2145618 LOC106591448 other upstream 658055 6141066 ~ 6148494 (-)

Expression

G2145066 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 4.
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G2145066 Expression in each Bioproject

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G2145066 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network