G2145550


Basic Information

Item Value
gene id G2145550
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 5877795 ~ 5972101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2453760
ccaaaagccggcgtgcacctggtcacccaaatggaacttgtgcacctggtcacccaaaaattataaaactgtccaaaatgcatttaccggtcattttatttatatagcccgctaggggagtagcccactacggccctctcttggtcggggccgtccttagtgctttatggacactttaagatattacgatggatgcagattgtgattgttttgcaaaagacccgtgtgcatctggtaacccaaaaattataaaactgttcaaaatgcatttaaagctatacctgaccttcatgcccgccaggggagtagcccactacttccctctctcagtgggggccctatttgagtgctttatggacggtttaaaatatcacgatggatgcagattgctattaatcctccgtgcacctggtgattgaaaacgtgcatctggtaacccaaaaattaaaatatggaccgcgggtgaatggagggagtaactatgactctcttaaggtagccaactgcttgatgagcatatacatccgtgcaactggtgatttgaaatgtgcatctggtaacccaaaatagatggtaaataaatcacagaaattgcactatgtccatctctgtgaatgagagtacacatacaggcataaaggccctaactccctatcaaggaacaggcctctctctcctggcatgagagaacacataaatccctaaaggtcaaactctgggcctggtgattggaaaaatgggccaaaaaaaaagggggacagagcagccaacctccacagaggctgactgctctgccccccttaaggacagtggaactatggaccttcaggcctaaaggccctcactacctatccagtaacaggcctccctctctggcatgagagtacaggcccttaatcaccacccgggtaacccgtgtgcacctggtcacccaaaatagatgtcgtgcacctggtcacctaaaaaggcccatgtgcacctggtcacccggacgctttccgcccagagcctaagtccacactgggttaccggtggtacttttcagcctagtactcacctcccttagtccgattacccactctctttttgggatatcggactctgggttgcccactctctcttgggcctttgggttaaccggtaccggtggtacttttcagcctagtactcaccttccttagtccgattacccactctctctatgggcttctggactctggctcctgtcgcttacatatgcacctggtaacccaaatgtatggaagaggggaggtggaggaagacgccttccg
>TU2453762
ggtaacccaaaaattataaaagggttttaaatacttttacccgtcatcctattgatatagcccgctaggggagtaccccactacggccctgtctcggtcgggcccgtcctgagtgctttatagacactttaagaaatcgcgatggatgcagattgctattaatcctccgtgcaactggtgattgaaaatgtgcaactggtgattgaaaacgtgcacctggtcacccaaaacacggttctctatgcggttagcggtgttccatctattcatgtccgcttatggcgcaccctactacggacctttagcaatgggggccggcccgaattatttatggaaggtctgatgatgattttttttttttttcaccatctctttctctctctgccggggccggccaagagtgctttatggacggtttaaaacatgactatggatgcaaatgctcattttcctccgtgcacctggtgattgaaaacgtgcatctggtaacccaaaaattataaaagggttttaaatacttttacccgtcattctattgatatagcccgctaggggagtgccccactacggccctctctctgtcagggccgtccttagtgctttatggacactttaagatattacgatggatgcagattgtgattgttttgcaaaagacccgtgtgcatctggtaacccaaaaattataaaactgttcaaaatgcatttaaagctatacctgaccttcatgcccgccaggggagtagcccactacttccctctctcagtgggggccctatttgagtgctttatggacggtttaaaatatcacgatggatgcagattgctattaatcctccgtgcacctggtgattgaaaacgtgcatctggtaacccaaaaattaaaatatggaccgcgggtgaatggagggagtaactatgactctcttaaggtagccaactgcttgatgagcatatacatccgtgcaactggtgatttgaaatgtgcatctggtaacccaaaatagatggtaaataaatcacagaaattgcactatgtccatctctgtgaatgagagtacacatacaggcataaaggccctaactccctatcaaggaacaggcctctctctcctggcatgagagaacacataaatccctaaaggtcaaactctgggcctggtgattggaaaaatgggccaaaaaaaagggggacagagcagccaacctccacagaggctgactgctctgccccccttaaggacagtggcactatggaccttcaggcctaaaggccctcactacctatccagtaacaggcctctctctcctggtatgagagaacacataaatccctaaaggtcaaactctgggcctggtgattggaaaaatgggccaaaaaaaaagggggacagagcagccaacctccacagaggctgactgctctgccccccttaaggacagtggaactatggaccttcaggcctaaaggccctcactacctatccagtaacaggcctccctctctggcatgagagtacaggcccttaatcaccacccgggtaacccgtgtgcacctggtcacccaaaatagatgtcgtgcacctggtcacctaaaaaggcccatgtgcacctggtcacccggacgctttccgcccagagcctaagtccacactgggttaccggtggtacttttcagcctagtactcacctcccttagtccgattacccactctctttttgggatatcggactctgggttgcccactctctcttgggcctttgggttaaccggtaccggtggtacttttcagcctagtactcaccttccttagtccgattacccactctctctatgggcttctggactctggctcctgtcgcttacatatgcacctggtaacccaaatgtatggaagaggggaggtggaggaagacgccttccg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2453760 False 1292 lncRNA 0.49 2 5877795 5879282
TU2453762 True 1925 lncRNA 0.48 3 5877795 5972101

Neighbor

gene id symbol gene type direction distance location
LOC110511721 NA coding downstream 49883 5827044 ~ 5827912 (-)
trnaa-cgc-8 NA coding downstream 84030 5793694 ~ 5793765 (-)
trnaa-cgc-7 NA coding downstream 94767 5782957 ~ 5783028 (-)
trnat-ugu-46 NA coding downstream 108081 5769643 ~ 5769714 (-)
trnaa-ugc-222 NA coding downstream 122287 5755437 ~ 5755508 (-)
LOC110509559 NA coding upstream 609099 6579264 ~ 6594474 (-)
LOC118945709 NA coding upstream 621716 6593817 ~ 6593895 (-)
LOC118945279 NA coding upstream 633216 6605317 ~ 6607608 (-)
LOC110509561 LOC106562926 coding upstream 698075 6670176 ~ 6688054 (-)
LOC110509562 LOC106562929 coding upstream 717441 6689542 ~ 6712436 (-)
G2145532 NA non-coding downstream 28185 5849134 ~ 5849610 (-)
G2145525 NA non-coding downstream 39662 5837800 ~ 5838133 (-)
G2145516 NA non-coding downstream 51286 5826256 ~ 5826509 (-)
G2145515 NA non-coding downstream 53548 5824015 ~ 5824247 (-)
G2145514 NA non-coding downstream 58386 5819050 ~ 5819409 (-)
G2145591 NA non-coding upstream 41466 6013567 ~ 6018394 (-)
G2145600 NA non-coding upstream 124891 6096992 ~ 6119285 (-)
G2145603 NA non-coding upstream 127955 6100056 ~ 6108099 (-)
G2145606 NA non-coding upstream 130806 6102907 ~ 6124709 (-)
G2145614 LOC106586052 non-coding upstream 158148 6130249 ~ 6136885 (-)
G2145511 NA other downstream 70171 5807065 ~ 5807624 (-)
G2145335 NA other downstream 122129 5749686 ~ 5755666 (-)
G2145316 opi-1 other downstream 205105 5641476 ~ 5672690 (-)
G2144911 NA other downstream 651484 5215083 ~ 5226311 (-)
LOC110509531 LOC106570883 other downstream 1447259 4208866 ~ 4430679 (-)
G2145604 NA other upstream 128670 6100771 ~ 6108752 (-)
G2145618 LOC106591448 other upstream 168965 6141066 ~ 6148494 (-)
G2145542 NA other upstream 177475 6137289 ~ 6252866 (-)
G2146036 NA other upstream 677077 6649178 ~ 6649663 (-)

Expression


Co-expression Network