XLOC_004046 (slc1a8a)


Basic Information

Item Value
gene id XLOC_004046
gene name slc1a8a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 15068307 ~ 15090564 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007716
TCAGAATCAAGTAGGAGAGATTGACATTTGAGGCAATGGGAAATAATACGAGCACCTTGTAAGAAGATCATGCAAAGTAAGTCACGTGCTGACTTCCTGTGGGTTTAAAGAAACATCTCATGAGGATTAGGTTCACGTAACTCTTCACCTCTACGTTATTTGACATCACATAAAAAATAAGATGGATGCACGATGCCCTAATCTCTTGTAAGAAAAGGTTACTCCTTGCCCTTCTGTGTCGCTTGAAGCATCTCACCATGGAGGAGCTACTGATACCCGCCGATGCTGACAAGGCACCACCAGAATCATCTTTCTTTACTTCTATGGGACCAGCTAAGTCTTTGCTGGAGAGAATTAAAGACTTTATGGCACCTACATTCTCTATAAGTGTCCGGGAGTTTATAAAGGAATACATCAAGCGAAATGGACTATTGACGCTGTCTGTACTAGCTGTGATCACAGGCTGTGTCTTAGGATTCATGCTGAGGGGCCTGTCCCTCTCCACACAGGCAAAAATTTATTTTTCCTTTCCTGGTGAGCTGCTCATGCGAATACTTAAAATGTTGATTCTCCCCCTAATCACCTCCAGCTTAATGTCTGGACTATCATCTATGGAGTCAAAAGCCTGCTGCAAGATGGGGGTTTTGACTGTCACCTACTACCTTTGGACCACCTTCATTGCTGTAGTGGTTGGCATTGTACTTGTTTTAATCATCAAACCTGGATATGGTACAGACATGGAGAGTAACAGACTGGGAAATGGACAGGTCATGACGTCTGCAGATGCACTGCTGGATCTGGTCAGAAATATGATCCCCTCCAATCTCATTGAAGCCACATTCCAGCAGTATAAAACAGACCTTATTCCAATTATAAAAACACCATTGAACCCTGGAACCCAAAATTTCTTCTACTTGATGCCTGATGACAACAATCCCAAGGGTCGAACAGTCTTGTTGGAACTTACACCTGCTCCAGACATTGAGTATAAGACTCGTCCAGGCAGCAGTCAGCAGATGAATGTACTTGGCATTGTTATTTTCTCTGCCACAATGGGTCTCTTACTTGGTAAAATGGGTGAACGGGGAGCTCCTCTGGTGAACGTTTGCCAGTGCATCAATGAATGCGTGATGAAGATCATTAATGCAGCAGTTTGGTATTTTCCTTTTGGGATCATCTTCCTTGTGGCTGGCAAAATACTGGACATGAGTGATCCGTCTACACTTGGAAAGAAACTAGGCTGGTATGGGGTGACAGTTCTGGCAGGCTTGTTTGTGCACGGGCTAGTCCTGCttccacttttttattttattttgactgggAAAAATCCTTTCACATACATTAGAGGGCTTTTGCAAGCCATGGTAATTGCCCTAGCCACATCATCCAGTTCAGCAACACTTCCCATTACAATGAAATGTTTATTGGAGAACTGTCGAGTGGACAGGCAGATTGCTCGATTTGTGCTGCCAGTGGGAGCAACCATTAACATGGATGGAACTGCACTTTATGAAGCAGTTGCTGCTATTTTCATTGCCCAGGTCAATGAGTACGAACTGGATTTTGGACAATTGATCACCATCAGTATAACCGCGACCGCTGCCAGCATAGGTGCTGCTGGAATTCCTCAGGCAGGCCTTGTAACCATGGTGATAGTTTTGACATCTGTCGGATTGCCACCAGATGACATCACTCTGATTGTGGCCATTGATTGGATCTTAGATCGCTTCCGAACTATGATCAACGTACTAGGAGATGCTCTAGCAGCTGGAATCATCGGTCATTTGTGTCGGAAAGACTTTCCACCAGACAGAGCGgCAAATGAAAATGGAGGTGCAAAAGACCCCCGGGCTGACCATGACATGGAGAATGTGCCTTTGACTGAAGTACCACTGCTTGCTGGCAAAGATTGTATATTCGAGGTGGTTGGGGACACAGTTTTTGAACGACCCACAGTCTACTACAATATATGTCAAGTCTGAGTCATATACAGTAACTGTTGCCTTGCAGATATCCAAGAACCTCTTTTTGGAGCTGCATTTCTGCCACTGTGCCATAAAGAATGAACACTAGTTTACACACTTTTTATATTGACAatagagtcttttttttttctttttttacagccTAATACATTCAGGCATCTTTTCCTATTGAAGTGAAATACTTCTATTTACAAGGAAAGACCTATACTGTTGAgggaaaaattattataattctttATTCTTCTTTAATTActtctcaagtgatatttaaaggatCAAAGACATTTtggcagtatttacatttttttttcttgtggataaagtcctgtttgttttattttggaataaaagcagttattacattttt
>TCONS_00007717
TTGCTGGAGAGAATTAAAGACTTTATGGCACCTACATTCTCTATAAGTGTCCGGGAGTTTATAAAGGAATACATCAAGCGAAATGGACTATTGACGCTGTCTGTACTAGCTGTGATCACAGGCTGTGTCTTAGGATTCATGCTGAGGGGCCTGTCCCTCTCCACACAGGCAAAAATTTATTTTTCCTTTCCTGGTGAGCTGCTCATGCGAATACTTAAAATGTTGATTCTCCCCCTAATCACCTCCAGCTTAATGTCTGGACTATCATCTATGGAGTCAAAAGCCTGCTGCAAGATGGGGGTTTTGACTGTCACCTACTACCTTTGGACCACCTTCATTGCTGTAGTGGTTGGCATTGTACTTGTTTTAATCATCAAACCTGGATATGGTACAGACATGGAGAGTAACAGACTGGGAAATGGACAGGTCATGACGTCTGCAGATGCACTGCTGGATCTGGTCAGAAATATGATCCCCTCCAATCTCATTGAAGCCACATTCCAGCAGTATAAAACAGACCTTATTCCAATTATAAAAACACCATTGAACCCTGGAACCCAAAATTTCTTCTACTTGATGCCTGATGACAACAATCCCAAGGGTCGAACAGTCTTGTTGGAACTTACACCTGCTCCAGACATTGAGTATAAGACTCGTCCAGGCAGCAGTCAGCAGATGAATGTACTTGGCATTGTTATTTTCTCTGCCACAATGGGTCTCTTACTTGGTAAAATGGGTGAACGGGGAGCTCCTCTGGTGAACGTTTGCCAGTGCATCAATGAATGCGTGATGAAGATCATTAATGCAGCAGTTTGGTATTTTCCTTTTGGGATCATCTTCCTTGTGGCTGGCAAAATACTGGACATGAGTGATCCGTCTACACTTGGAAAGAAACTAGGCTGGTATGGGGTGACAGTTCTGGCAGGCTTGTTTGTGCACGGGCTAGTCCTGCttccacttttttattttattttgactgggAAAAATCCTTTCACATACATTAGAGGGCTTTTGCAAGCCATGGTAATTGCCCTAGCCACATCATCCAGTTCAGCAACACTTCCCATTACAATGAAATGTTTATTGGAGAACTGTCGAGTGGACAGGCAGATTGCTCGATTTGTGCTGCCAGTGGGAGCAACCATTAACATGGATGGAACTGCACTTTATGAAGCAGTTGCTGCTATTTTCATTGCCCAGGTCAATGAGTACGAACTGGATTTTGGACAATTGATCACCATCAGTATAACCGCGACCGCTGCCAGCATAGGTGCTGCTGGAATTCCTCAGGCAGGCCTTGTAACCATGGTGATAGTTTTGACATCTGTCGGATTGCCACCAGATGACATCACTCTGATTGTGGCCATTGATTGGATCTTAGATCGCTTCCGAACTATGATCAACGTACTAGGAGATGCTCTAGCAGCTGGAATCATCGGTCATTTGTGTCGGAAAGACTTTCCACCAGACAGAGCGgCAAATGAAAATGGAGGTGCAAAAGACCCCCGGGCTGACCATGACATGGAGAATGTGCCTTTGACTGAAGTACCACTGCTTGCTGGCAAAGATTGTATATTCGAGGTGGTTGGGGACACAGTTTTTGAACGACCCACAGTCTACTACAATATATGTCAAGTCTGAGTCATATACAGTAACTGTTGCCTTGCAGATATCCAAGAACCTCTTTTTGGAGCTGCATTTC

Function

symbol description
slc1a8a Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101111-8 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000104204

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007716 False 2352 mRNA 0.42 12 15068307 15090564
TCONS_00007717 True 1702 mRNA 0.45 11 15068616 15090118

Neighbor

gene id symbol gene type direction distance location
XLOC_004045 CR550302.1 coding downstream 48780 15018138 ~ 15019527 (-)
XLOC_004044 elavl1b coding downstream 66595 14955484 ~ 15001712 (-)
XLOC_004043 si:dkey-6d5.1 coding downstream 144169 14915780 ~ 14924138 (-)
XLOC_004042 NA coding downstream 194177 14873329 ~ 14874130 (-)
XLOC_004041 CU019562.1 coding downstream 238983 14827374 ~ 14829324 (-)
XLOC_004047 rpn2 coding upstream 134970 15225534 ~ 15297210 (-)
XLOC_004048 NA coding upstream 220817 15311381 ~ 15313599 (-)
XLOC_004049 ghrh coding upstream 255090 15345654 ~ 15435495 (-)
XLOC_004050 NA coding upstream 666162 15756726 ~ 15761871 (-)
XLOC_004051 FP016142.5 coding upstream 684888 15775452 ~ 15780923 (-)
XLOC_004019 CR450764.8 misc downstream 2376616 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 2446540 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 2477011 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 2555045 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 2568045 12499966 ~ 12500262 (-)
XLOC_004063 CR854846.1 misc upstream 1036818 16127382 ~ 16127678 (-)
XLOC_004039 NA non-coding downstream 309219 14754905 ~ 14759088 (-)
XLOC_004038 CR550307.1 non-coding downstream 372443 14693481 ~ 14695864 (-)
XLOC_004052 FP016142.4 non-coding upstream 705529 15796093 ~ 15797568 (-)
XLOC_004053 FP016142.3 non-coding upstream 707694 15798258 ~ 15799923 (-)

Expression


Co-expression Network