G2145618 (LOC106591448)



Basic Information


Item Value
gene id G2145618
gene name LOC106591448
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 6141066 ~ 6148494 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU2453878
GGGGagatgtggtacccccctacctccctccccgatgggacagagcatgcgcgccctggcgacccactcgtacctgccaccccacatgaactgaaacacaagcctcactagaggcctcctcagacaagctggcaatgggtagatgtacgccaaGTACAAAAGAGATGGCAAtacatccacctttaggaccaggaccTTACCTATAAAGGACAAagacctagccttccacattgccaACTTCTTCTGTACCACTGCAATACCCATGTTCCAGTTCAGCGTCGCTGAGCcagaggtctcaaaatggaccccgagaatcctcagggccccctcacagagagataaccccccgggcacatccgtcctaccgcgccatcttccgaaaaacttaacggaagactttgcatgatTCAGAACCGCCCCCGACGCTTGGGTGAAATCCCCAATGATGGCAAgagaccttgtcaggcacgagtccttgcacaacagcaaggaagtgtcgtcggcgtactgcgtcatcttaacacgcagcccaccgctcccagggatcaacaagccctccacccctgtgtctgccctaatggcagcccccagaggctccatgtacagtaCGAAGAGGAGGgccgagagtgggcatccctgcctgaccccagacgagaggtcaaaaacgtcacctaagtgactatttacactaactcgacaccccgctccgacatataatgtacggatccatcctataaacttctccccaaatcctaatctaccTAATACCCTGAATAGAAaggatctattcacgcgatcaaaggctttcgcctgatctagcgctgctaccattaaaggcagccctctatcttcaacccaggCGATGGAGTCCCTAatcaactgtaggttccatcttatagagcggccctctaccccgcacgtctgatcctcatggacgacgtagggaagggctgtgcgcaaccggtctgctaaaacctttgcaagaatcttgtaatctacgcacagcatggtcaacggccgccagttgccaaggtcagttgcttcccccttcttataaagaagtgacagcacaccaacagccattgatccccccgggacccccgtctc

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU2453878 True 1107 TUCP 0.54 2 6141066 6148494

Neighbor


gene id symbol gene type direction distance location
LOC118945553 NA coding downstream 243982 5896903 ~ 5897084 (-)
LOC118945579 NA coding downstream 244544 5896406 ~ 5929252 (-)
LOC110511721 NA coding downstream 313154 5827044 ~ 5827912 (-)
trnaa-cgc-8 NA coding downstream 347301 5793694 ~ 5793765 (-)
trnaa-cgc-7 NA coding downstream 358038 5782957 ~ 5783028 (-)
LOC110509559 NA coding upstream 432706 6579264 ~ 6594474 (-)
LOC118945709 NA coding upstream 445323 6593817 ~ 6593895 (-)
LOC118945279 NA coding upstream 456823 6605317 ~ 6607608 (-)
LOC110509561 LOC106562926 coding upstream 521682 6670176 ~ 6688054 (-)
LOC110509562 LOC106562929 coding upstream 541048 6689542 ~ 6712436 (-)
G2145614 LOC106586052 non-coding downstream 4181 6130249 ~ 6136885 (-)
G2145606 NA non-coding downstream 16357 6102907 ~ 6124709 (-)
G2145600 NA non-coding downstream 21781 6096992 ~ 6119285 (-)
G2145603 NA non-coding downstream 32967 6100056 ~ 6108099 (-)
G2145591 NA non-coding downstream 122672 6013567 ~ 6018394 (-)
G2145629 NA non-coding upstream 56785 6205279 ~ 6233514 (-)
G2145543 NA non-coding upstream 90522 6239016 ~ 6285258 (-)
G2145547 NA non-coding upstream 103427 6251921 ~ 6266983 (-)
G2145637 NA non-coding upstream 112869 6261363 ~ 6276405 (-)
G2145689 NA non-coding upstream 192576 6341070 ~ 6341736 (-)
G2145604 NA other downstream 32314 6100771 ~ 6108752 (-)
G2145511 NA other downstream 333442 5807065 ~ 5807624 (-)
G2145335 NA other downstream 385400 5749686 ~ 5755666 (-)
G2145316 opi-1 other downstream 468376 5641476 ~ 5672690 (-)
G2144911 NA other downstream 914755 5215083 ~ 5226311 (-)
G2145542 NA other upstream 1082 6137289 ~ 6252866 (-)
G2146036 NA other upstream 500684 6649178 ~ 6649663 (-)
LOC110509586 LOC106562956 other upstream 1982289 8130783 ~ 8168089 (-)
ttc33 LOC106568686 other upstream 3216718 9365212 ~ 9437537 (-)

Expression


G2145618(LOC106591448) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
End of interactive chart.

G2145618(LOC106591448) Expression in each Bioproject

Bar chart with 20 bars.
G2145618(LOC106591448) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network