G2145984


Basic Information

Item Value
gene id G2145984
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 6525297 ~ 6526526 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2454274
tttcatggaaaagtgtttatttctgtatttcaaggttgcaacttgcttacaattgtccacagtgttcctatcatctagtttaaacagtactgcaaaaatgttactttacagagtgcatcaaagatgatttagaccattttcatggaaaagtgtttatttctgtatttcaaggttgcaacttgctgaaaaatgtcaaCAGTGTTCCTataatctagtttaaacagtactgcaaaaatgttactttacagagtgcatcaaacatgatttagaccttgtttatggaaaagtgtttatttctgtatttcaaggttgcaacttgatgaaaattgtccacagtgtatcatctagtttaaacagtattgcaaaaatgttacttacagagtgcatcaaacatgatttagaccttgtttatggaaaaatgtttatttctgtatttcaaggttgcaacttgattaaaattgtccacagtgtatcatctagtttaaacagtactgcaaaaatgttacttacagagtgcatcaaacatgatttagaccgttttcatgtaaaagtgtttatttctgtatttcaaggttgcaacttaatgaaaattgtccacattgttcctatcatctagtttaaacagtactgcaaaaatgttacttacagagtgcatcaaacatgatttagaccttgtttatggaaaagtgtttatttctgtatttcaaggttgcaacttgctgaaaaatatccacagtgttcctatcatctagtttaggcagtacttcaaaaacaaaatacggacagagtgcatcaaacatgatttagaccttgtttatggaaaagtgtttatttctgtatttcatggttgcaacttgctgaaaaatgtccacagtgttcctatcatctactttaaacactcctgcaaaaatgTTAATTACAGATTGCATCAAACactatttagaccttgtttatggaaaagtgtttatttctgtatttcaaggttgcaacttgctgaaaaatatccacagtgttcctatcatctagtttagacagtacttcaaaaaaaatatggacagagtgcatcaaacatgatttagatcgtTTTCAtggaatatccacagtgttcctatcatctagtttaggcagtacttcaaaaaaaaaaatacggacagagtgcatcaaacatgatttagaccttgtttatggaaaagtgtttatttttgtatttgaagtttgcatcttgcttac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2454274 True 1230 lncRNA 0.32 1 6525297 6526526

Neighbor

gene id symbol gene type direction distance location
LOC118945553 NA coding downstream 628213 5896903 ~ 5897084 (-)
LOC118945579 NA coding downstream 628775 5896406 ~ 5929252 (-)
LOC110511721 NA coding downstream 697385 5827044 ~ 5827912 (-)
trnaa-cgc-8 NA coding downstream 731532 5793694 ~ 5793765 (-)
trnaa-cgc-7 NA coding downstream 742269 5782957 ~ 5783028 (-)
LOC110509559 NA coding upstream 54674 6579264 ~ 6594474 (-)
LOC118945709 NA coding upstream 67291 6593817 ~ 6593895 (-)
LOC118945279 NA coding upstream 78791 6605317 ~ 6607608 (-)
LOC110509561 LOC106562926 coding upstream 143650 6670176 ~ 6688054 (-)
LOC110509562 LOC106562929 coding upstream 163016 6689542 ~ 6712436 (-)
G2145734 NA non-coding downstream 6088 6518706 ~ 6519209 (-)
G2145728 NA non-coding downstream 54531 6470557 ~ 6470766 (-)
G2145727 NA non-coding downstream 56238 6468469 ~ 6469059 (-)
G2145725 NA non-coding downstream 58554 6466373 ~ 6466743 (-)
G2145724 yo84 non-coding downstream 61328 6463564 ~ 6463969 (-)
G2145981 NA non-coding upstream 189 6526715 ~ 6531814 (-)
G2145978 NA non-coding upstream 2446 6528972 ~ 6541364 (-)
G2145995 NA non-coding upstream 16817 6543343 ~ 6545251 (-)
G2145970 NA non-coding upstream 50770 6577296 ~ 6578107 (-)
G2145542 NA other downstream 272431 6137289 ~ 6252866 (-)
G2145618 LOC106591448 other downstream 376803 6141066 ~ 6148494 (-)
G2145604 NA other downstream 416545 6100771 ~ 6108752 (-)
G2145511 NA other downstream 717673 5807065 ~ 5807624 (-)
G2145335 NA other downstream 769631 5749686 ~ 5755666 (-)
G2146036 NA other upstream 122652 6649178 ~ 6649663 (-)
LOC110509586 LOC106562956 other upstream 1604257 8130783 ~ 8168089 (-)
ttc33 LOC106568686 other upstream 2838686 9365212 ~ 9437537 (-)
G2151189 NA other upstream 4191495 10718021 ~ 10799318 (-)

Expression


Co-expression Network