G2145981


Basic Information

Item Value
gene id G2145981
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 6526715 ~ 6531814 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2454271
aattgtccacagtgtatcatctagtttaaacagtactgcaaaaatgttacttacagagtgcatcaaacatgatttagaccttgtttatggaaaaatgtttatttctgtatttcaaggttgcaacttgattaaaattgtccacagtgtatcatctagtttaaacagtactgcaaaaatgttacttacagagtgcatcaaacatgatttagaccgttttcatgtaaaagtgtttatttctgtatttcaaggttgcaacttgatgaaaattgtccacattgttcctatcatctagtttaaacagtactgcaaaaatgttacttacagagtgcatcaaacatgatttagaccttgtttatggaaaagtgtttatttctgtatttaaaggttgcaacttgctgaaaaatatccacagtgttcctatcatcttgtttaggcagtacttcaaaaaaaaaatacggacagagtgcatcaaacatgatttacaccttgttcatggaaaagtgtttatttctgtatttcatggttgcaacttgctgaaaaatgtccacagtgttcctatcatctagtttaaacagtactgcaaaaatgttactttacagagtgcatcaaagatgatttagaccattttcatggaaaagtgtttatttctgtatttcaaggttgcaacttgcttacaattgtcAACAGTGTTCCTataatctagtttaaacagtactgcaaaaatgttactttacagagtgcatcaaacatgatttagaccttgtttatggaaaagtgtttatttctgtatttcaaggttgcaacttgatgaaaattgtccacagtgtatcatctagtttaaacagtactgcaaaaatgttacttacagagtgcatcaaacatgatttagaccttgcttatggaaaaatgtttatttctgtatttcaaggttgcaacttgattaaaattgtccacagtgtatcatctagtttaaacagtactgcaaaaatgttacttacagagtgcatcaaacatgatttagaccgttttcatgtaaaagtgtttatttctgtatttcaaggttgcaacttgatgaaaattgtccacattgttcctatcatctagtttaaacagtactgcaaaaatgttacttacagagtgcatcaaacatgatttagaccttgtttatggaaaagtgtttatttctgtatttcaaggttgcaacttgctgaaaaatatccacagtgttcctatcatctagtttaggcagtacttcaaaaaaaaaatacggacagagtgcatcaaacatgatttacaccttgtttatggaaaagtgtttatttctgtatttcatggttgcaacttgctgaaaaatgtccacagtgttcctatcatctactttaaacactcctgcaaaaatgttaattacagagtgcatcaaacatgatttagaccttgtttatggaaaagtgtttatttctgtatttcaaggttgcaacttgctgaaaaatatccacagtgttcctatcatctagtttagacagtacttcaaaaaaaatatggacagagtgcatcaaacatgatttagatcgtTTTCAtggaatatccacagtgttcctatcatctagtttaggcagtacttcaaaaaaaaaaatacggacagagtgcatcaaacatgatttagaccttgtttatggaaaagtgtttatttttgtatttgaagtttgcatcttgcttacaattgtccacagtgttcctaacatctagtttaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2454271 True 1752 lncRNA 0.32 2 6526715 6531814

Neighbor

gene id symbol gene type direction distance location
LOC118945553 NA coding downstream 629631 5896903 ~ 5897084 (-)
LOC118945579 NA coding downstream 630193 5896406 ~ 5929252 (-)
LOC110511721 NA coding downstream 698803 5827044 ~ 5827912 (-)
trnaa-cgc-8 NA coding downstream 732950 5793694 ~ 5793765 (-)
trnaa-cgc-7 NA coding downstream 743687 5782957 ~ 5783028 (-)
LOC110509559 NA coding upstream 49386 6579264 ~ 6594474 (-)
LOC118945709 NA coding upstream 62003 6593817 ~ 6593895 (-)
LOC118945279 NA coding upstream 73503 6605317 ~ 6607608 (-)
LOC110509561 LOC106562926 coding upstream 138362 6670176 ~ 6688054 (-)
LOC110509562 LOC106562929 coding upstream 157728 6689542 ~ 6712436 (-)
G2145984 NA non-coding downstream 189 6525297 ~ 6526526 (-)
G2145734 NA non-coding downstream 7506 6518706 ~ 6519209 (-)
G2145728 NA non-coding downstream 55949 6470557 ~ 6470766 (-)
G2145727 NA non-coding downstream 57656 6468469 ~ 6469059 (-)
G2145725 NA non-coding downstream 59972 6466373 ~ 6466743 (-)
G2145995 NA non-coding upstream 11529 6543343 ~ 6545251 (-)
G2145970 NA non-coding upstream 45482 6577296 ~ 6578107 (-)
G2146023 NA non-coding upstream 94151 6625965 ~ 6626598 (-)
G2146033 NA non-coding upstream 110566 6642380 ~ 6642806 (-)
G2145542 NA other downstream 273849 6137289 ~ 6252866 (-)
G2145618 LOC106591448 other downstream 378221 6141066 ~ 6148494 (-)
G2145604 NA other downstream 417963 6100771 ~ 6108752 (-)
G2145511 NA other downstream 719091 5807065 ~ 5807624 (-)
G2145335 NA other downstream 771049 5749686 ~ 5755666 (-)
G2146036 NA other upstream 117364 6649178 ~ 6649663 (-)
LOC110509586 LOC106562956 other upstream 1598969 8130783 ~ 8168089 (-)
ttc33 LOC106568686 other upstream 2833398 9365212 ~ 9437537 (-)
G2151189 NA other upstream 4186207 10718021 ~ 10799318 (-)

Expression


Co-expression Network