G2145739


Basic Information

Item Value
gene id G2145739
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 6558476 ~ 6563179 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2454003
aaataaacacttttccataaacaaggtctaaatcatgtttgatgcactctgtaaagtaacatttttgcagtactgtttaaactagattataggaacactgtggacaattttcagcaagttgcaacctgaaatacagaaataaacacttttccatgaaaatggtctaaatcatctttgatgcactctgtaaagtaacatttttgcagtactgtttaaactagatgataggaacactgttgacatttttcagcaagttgcaaccttgaaatacagaaataaacacttttccatgaaaatggtctaaatcatctttgatgcactctgtaaagtaacatttttgcagtactgtttaaactagatgataggaacactgtggacaattgtaagcaagttgcaaccttgaaatacagaaataaacacttttccatgaaaatggtctaaatcatctttgatgcactctgtaaagtaacatttttgcagtactgtttaaagtagatgataggaacactgtggacatttttcagcaagttgcaaccatgaaatacagaaataaacacttttccataaacaaggtgtaaatcatgtttgatgcactctgtccgtatttttttttttgaagtactgcctaaactagatgataggaacactgtggatatttttcagcaagttgcaacattgaaatacagaaataaacacttttccataaacaaggtctaaatcatgtttgatgcactctgtaagtaacatttttgcagtactgtttaaactagatgataggaacactgtggacaattttcagcaagttgcaacctgaaatacagaaataaacacttttccatgaaaatggtctaaatcatgtttgatgcactctaagtattttgttttgcaggagtgtttaaactagatgttaggaacactgtggacaactgtaagcaagatgcaaacttcaaatacaaaaataaacacttttccataaacaaggtctaaatcatgtttgatgcactctgtccgtatttttttttttgaagtactgcctaaactagatgataggaacactgtggatattccaTGAAAacgatctaaatcatgtttgatgcactctgtccatattttttttgaagtactgtctaaactagatgataggaacactgtggatatttttcagcaagttgcaaccttgaaatacagaaataaacacttttccataaacaaggtctaaatagtgtttgatgcactctgtaattaacatttttgcaggagtgtttaaagtagttgataggaacactgtggacatttttcagcaagttgcaaacatgaaatacagaaataaacacttttccataaacaaggtgtaaatcatgtttgatgcactctgtccgtatttttttttttgaagtactgcctaaactagatgataggaacactgtggatatttttcagcaagttgcaaccttgaaatacagaaataaatgcttttccataaacaaggtctaaatcatgtttgatgcactctgtaagtaacatttttgcagtactgtttaaactagatgttaggaacactgtggacaattgtaagcaagatgcaaacttcaaatacaaaaataaacacttttccataaacaaggtctaaatcatgtttgatgcactctgtccgtattttttttttgaagtactgcctaaactagatgataggaacactgtggatattccaTGAAAacgatctaaatcatgtttgatgcactctgtccatattttttttgaagtactgtctaaactagatgataggaacactgtgaatatttttcagcaagttgcaaccttgaaatacagaaataaacacttttccataaacaaggtgtaaatcatctttgatgcactctgtaattaacatttttgcaggagtgtttaaagtagatgataggaacactgtggacatttttcagcaagttgcaaccatgaaatacagaaataaacacttttccataaacaaggtgtaaatcatgtttgatgcactctgtccgtatttttttttgaagtactgcctaaactagatggtaggaacactgtggatatttttcagcaagttgcaaccttgaaatacagaaataaacacttttccataaacaaggtctaaatcatgtttgatgcactctgtaagtaacatttttgcagtactgtttaaactagatgataggaacaatgtggacaattttcatcaagttgcaaccttgaaatacagaaataaacacttttccatgaaaacggtctaaatcatgtttgatgcactctgtaagtaacatttttgcagtactgtttaaagtagatgataggaacactgtggacatttttcagcaagttgcaaccatgaaatacagaaataaacacttttccataaacaaggtgtaaatcatgtttgatgcactctgtccgtattttttttttgaagtactgcctaaactagatgataggaacactgtggatatttttcagcaagttgcaaccttgaaatacagaaataaacacttttccataaacaaggtctaaatcatgtttgatgcactctgtaagtaacatttttgcagtactgtttaaactagatgataggaacactgtggacaattttcagcaagttgcaacctgaaatacagaaataaacacttttccatgaaaatggtctaaatcatctttgatgcactctgtaaagtaacatttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2454003 True 2713 lncRNA 0.33 2 6558476 6563179

Neighbor

gene id symbol gene type direction distance location
LOC118945571 NA coding upstream 245423 6312938 ~ 6313053 (+)
LOC118945669 NA coding upstream 248129 6310231 ~ 6310347 (+)
LOC118945566 NA coding upstream 248410 6309887 ~ 6310066 (+)
LOC118945577 NA coding upstream 253875 6304485 ~ 6304601 (+)
LOC118945564 NA coding upstream 255830 6302474 ~ 6302646 (+)
LOC110509560 LOC106562923 coding downstream 35881 6599060 ~ 6622505 (+)
LOC110509307 LOC106562924 coding downstream 77603 6640782 ~ 6664348 (+)
LOC118936374 NA coding downstream 104498 6667677 ~ 6673995 (+)
LOC110509565 LOC105006106 coding downstream 163174 6726353 ~ 6756968 (+)
LOC110509567 LOC106562933 coding downstream 234924 6798103 ~ 6816600 (+)
G2145744 NA non-coding upstream 37617 6520604 ~ 6520859 (+)
G2145732 NA non-coding upstream 41088 6517052 ~ 6517388 (+)
G2145731 NA non-coding upstream 63986 6494096 ~ 6494490 (+)
G2145729 NA non-coding upstream 76522 6481666 ~ 6481954 (+)
G2145723 yo84 non-coding upstream 94435 6463543 ~ 6464041 (+)
G2145737 NA non-coding downstream 61 6563240 ~ 6573206 (+)
G2145782 NA non-coding downstream 63196 6626375 ~ 6626585 (+)
G2145805 NA non-coding downstream 98287 6661466 ~ 6661683 (+)
G2145809 NA non-coding downstream 101178 6664357 ~ 6664560 (+)
G2145733 NA other upstream 39336 6518690 ~ 6519140 (+)
LOC118945315 LOC106593246 other upstream 284983 6267751 ~ 6274178 (+)
G2145368 NA other upstream 325978 6188572 ~ 6232498 (+)
G2145469 NA other upstream 338534 6182511 ~ 6219942 (+)
G2146821 NA other downstream 1436950 8000129 ~ 8000490 (+)
LOC118945282 NA other downstream 2394624 8957803 ~ 9032295 (+)
G2149183 NA other downstream 2810821 9374000 ~ 9374512 (+)
LOC110509604 LOC106562973 other downstream 3739509 10064167 ~ 10309768 (+)

Expression


Co-expression Network