G2147060


Basic Information

Item Value
gene id G2147060
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 7279370 ~ 7282428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2455417
TGGattcaactaaccggtgcccccacacattgactctgtaccggctgtatatattgttattttttactcctcctctttaattacttgttacttttatctcttatccatatttttttaaactgcactgtcggttaaggggctcgtaagtaagcatgtcactGCAATATGGAACTTTGGACGTAGTATCAGGTTTTGATTCAGGGGAAGGCGAAGTTGGgtgtgatgtaccgatcctgtgcaggtgttgttgcacgtggtctgccactgcgaggacgatcagctgttcgtcctgtctccctgtagcgctgtcttaggcgtctcacagtacagacattgcaattttttgccctggccacatctgcagtcctcatgcctccttacagcatgcctaaggcacgttcacgcagatgagcagggaccctgggcatcttgcTTTTGGTATTCTTCAGAGTCAGTagcagtagaaaggcctctttagtgtcctaagttgtcataactgtgaccttaattgcctaccgtctgtaagctgttaatgtcttaacgacagttccacaggtgcatgttcattaattgtttattgttcattgaacaagcatgggaaacagtgtttaaaccatttacaatctgtgaagttatttggatttttatgaattatctttgaaagacagggtcctgaaaaagggacgtttctttttttgctgagtttataaaattcttgccaccaacagattgttatatacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcc
>TU2455419
TGGattcaactaaccggtgcccccacacattgactctgtaccggctgtatatattgttattttttactcctcctctttaattacttgttacttttatctcttatccatatttttttaaactgcactgtcggttaaggggctcgtaagtaagcatgtcactGCAATATGGAACTTTGGACGTAGTATCAGGTTTTGATTCAGGGGAAGGCGAAGTTGGgtgtgatgtaccgatcctgtgcaggtgttgttgcacgtggtctgccactgcgaggacgatcagctgttcgtcctgtctccctgtagcgctgtcttaggcgtctcacagtacagacattgcaattttttgccctggccacatctgcagtcctcatgcctccttacagcatgcctaaggcacgttcacgcagatgagcagggaccctgggcatcttgcTTTTGGTATTCTTCAGAGTCAGTagcagtagaaaggcctctttagtgtcctaagttgtcataactgtgaccttaattgcctaccgtctgtaagctgttaatgtcttaacgacagttccacaggtgcatgttcattaattgtttattgttcattgaacaagcatgggaaacagtgtttaaaccatttacaatctgtgaagttatttggatttttatgaattatctttgaaagacagggtcctgaaaaagggacgtttctttttttgctgagtttataaaattcttgcc
>TU2455420
AGCAGAGAAGCAGAATGTTTGTCTAGTGGTCGATAAATTATATGTCAACAACCAAATGTTCAAGGACTCAAAGATTACAACGTGGCTGTGAGTGATAGCTACCTCCTGTTGAATAAGTTTCCAGATACATATTTGCACCGCATTACACAGTAAACATATGGattcaactaaccggtgcccccacacattgactctgtaccggctgtatatattgttattttttactcctcctctttaattacttgttacttttatctcttatccatatttttttaaactgcactgtcggttaaggggctcgtaagtaagcatgtcactGCAATATGGAACTTTGGACGTAGTATCAGGTTTTGATTCAGGGGAAGGCGAAGTTGGgtgtgatgtaccgatcctgtgcaggtgttgttgcacgtggtctgccactgcgaggacgatcagctgttcgtcctgtctccctgtagcgctgtcttaggcgtctcacagtacagacattgcaattttttgccctggccacatctgcagtcctcatgcctccttacagcatgcctaaggcacgttcacgcagatgagcagggaccctgggcatcttgcTTTTGGTATTCTTCAGAGTCAGTagcagtagaaaggcctctttagtgtcctaagttgtcataactgtgaccttaattgcctaccgtctgtaagctgttaatgtcttaacgacagttccacaggtgcatgttcattaattgtttattgttcattgaacaagcatgggaaacagtgtttaaaccatttacaatctgtgaagttatttggatttttatgaattatctttgaaagacagggtcctgaaaaagggacgtttctttttttgctgagtttataaaattcttgcc
>TU2455418
TGGattcaactaaccggtgcccccacacattgactctgtaccggctgtatatattgttattttttactcctcctctttaattacttgttacttttatctcttatccatatttttttaaactgcactgtcggttaaggggctcgtaagtaagcatgtcactGCAATATGGAACTTTGGACGTAGTATCAGGTTTTGATTCAGGGGAAGGCGAAGTTGGgtgtgatgtaccgatcctgtgcaggtgttgttgcacgtggtctgccactgcgaggacgatcagctgttcgtcctgtctccctgtagcgctgtcttaggcgtctcacagtacagacattgcaattttttgccctggccacatctgcagtcctcatgcctccttacagcatgcctaaggcacgttcacgcagatgagcagggaccctgggcatcttgcTTTTGGTATTCTTCAGAGTCAGTagcagtagaaaggcctctttagtgtcctaagttgtcataactgtgaccttaattgcctaccgtctgtaagctgttaatgtcttaacgacagttccacaggtgcatgttcattaattgtttattgttcattgaacaagcatgggaaacagtgtttaaaccatttacaatctgtgaagttatttggatttttatgaattatctttgaaagacag

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2455417 False 788 lncRNA 0.43 3 7279370 7282270
TU2455419 False 720 lncRNA 0.43 3 7279438 7282270
TU2455420 False 878 lncRNA 0.42 3 7279438 7282428
TU2455418 True 668 lncRNA 0.43 3 7279490 7282270

Neighbor

gene id symbol gene type direction distance location
LOC110509571 LOC106562938 coding downstream 170881 7100019 ~ 7188516 (-)
LOC110509569 NA coding downstream 194896 7081151 ~ 7092061 (-)
LOC110509568 LOC106562935 coding downstream 206755 6999640 ~ 7072615 (-)
LOC110509308 LOC106563009 coding downstream 335591 6912441 ~ 6943779 (-)
LOC110509566 LOC106562932 coding downstream 507553 6767077 ~ 6771817 (-)
LOC110509574 foxd1 coding upstream 219852 7502280 ~ 7504108 (-)
LOC110509578 LOC106569021 coding upstream 238800 7515012 ~ 7528208 (-)
LOC110509579 enc1 coding upstream 607341 7889769 ~ 7901814 (-)
gfm2 gfm2 coding upstream 632957 7915385 ~ 7927945 (-)
LOC110509585 LOC106562949 coding upstream 663258 7945686 ~ 7959100 (-)
G2146162 NA non-coding downstream 380598 6876755 ~ 6898772 (-)
G2146146 NA non-coding downstream 423752 6854980 ~ 6855618 (-)
G2146145 NA non-coding downstream 424499 6854163 ~ 6854871 (-)
G2147423 NA non-coding upstream 495671 7778099 ~ 7825621 (-)
G2147497 NA non-coding upstream 577163 7859591 ~ 7881899 (-)
G2147473 NA non-coding upstream 603095 7885523 ~ 7888068 (-)
G2147512 NA non-coding upstream 608019 7890447 ~ 7890653 (-)
G2146036 NA other downstream 629707 6649178 ~ 6649663 (-)
LOC110509559 NA other downstream 684896 6579264 ~ 6594474 (-)
G2145542 NA other downstream 1026504 6137289 ~ 6252866 (-)
G2145618 LOC106591448 other downstream 1130876 6141066 ~ 6148494 (-)
G2145604 NA other downstream 1170618 6100771 ~ 6108752 (-)
LOC110509586 LOC106562956 other upstream 848355 8130783 ~ 8168089 (-)
ttc33 LOC106568686 other upstream 2082784 9365212 ~ 9437537 (-)
G2151189 NA other upstream 3435593 10718021 ~ 10799318 (-)
ttll11 LOC106562979 other upstream 3668821 10923070 ~ 10969315 (-)
G2151771 NA other upstream 3710738 10993166 ~ 10993879 (-)

Expression


Co-expression Network