G2147473


Basic Information

Item Value
gene id G2147473
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 7885523 ~ 7888068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2455864
TGTATGAACACCTCCAACCATTTGGCCAGTGAGGTGTACAGATCAGAGGTtaagaggtcaggggttaggggtcagagtaGGGATGGACATGGGGAGGATGGACGTCGCTCAGATTACCCAGAGTGCAAGTGGGTAGTGTAATATCTCACATATTAATGTTGACTTCTATGAGGCATATCTGCTTAATGTGATTAAATGTAACTAACTGACTCTGGTCAAACTGGGGCCTAAAGCGCTACACCAAATGGCCTTGTTGTTGTGTCAACAGAGACACTGCTagaggaaaaacaacaacaacaatgttaACGACAAAAGCAAGCAGGCTGTGAGAATTTGTATGTGTTCGAAGCTAGCGGCAGAGGCGTGCAGTAACTGTGAGGAACATCAGCACAGtgacacacaaaccacacacgcacacacacacacacacaaacacacaccctgtgACCCTGACACCGCTAGCCAGGCCCCGTGTAGTTATGTGAGGAATGTGAAGGTGGCAGCTGTCCTTGGAACAGCTGGGGGACTGACTGTGTCACATCTACCCTGGGCTCAACCCCTTCAGGCGTTACTCTAGGTCCCCTCACTAGGTCCCTGGGCCCCTCTGAGTCCCTGGGCCCTTTAAGTCCCACactcaaatatgaaatattctGACTTGAGATGAGTGTATGTAAATCAGACTTTCTTGTAAATAATTTATTAATATCAACAGGAGACTTGCATGACAATTTGAGCATGTCGATCTCAAGTCAGAATACTTCCCGTTTAGTGTAGTGTGAAAATGAGGGAGATGAGGAAGCGGATGGGTTCGTTGAATCCTGTAATCTTGGTGTGTTGGTGTTGATAAGGGCAGGCGGACACCGCAGTGCTTTTCACAATGGTGTCACTGATGTATGGGAAGAAATATGACAGGGGAGAGATCCTAAGACCAAAAAAGGGAATTCTGGACTTTTTGTCTGTTTATCTGTCTAGGTGGCCAAAACATTGACATATACAGTTTAGCATCAATGAAATCATTATGTATGTCAACAAAAAAGCTAACAGTTGTATAGATTTTCCCAGGATGTATAATGGTTGTATTCAGTGAATCGCCTCAACCCCTAAGAACTAAATGGGCAACATTCCACATTCCTGTTTGATTGTGTGAGCTACCCACTTCATAGCCCACCTCCCAGGCCTACAAAAGCAGGAATCGTTTGAGGAATTCTATGGAGACTCATTAGCACCTTGATGTCAACCCCCTAACCAACCCGTTCACAGAACACtgcccaactggcctcacaaatCAGACAAGCGGGTTACTTAAGTGATCAaacccCGGCTtggagggcattatcacttttatacaacaggttaccaacatattcaaataatgattgacacattttcataattttttaacattttgattaatttattcatactatttaatccttccacaagatatagtcccgacacaaatctatggttgctagagacgcgacaccatcgttcgttctaaatgttccattgccatactggctggcaacgttcttaccccttgcttgttagctagccaactacgggtaatttacagtcatgtcaaaaagtgcagccagaataacagcaaagtagctgcatttacatttgtttaagctgttttctagtgacatttatttggatacatccataacaataagttaatgaggcacgatttcgcctggcatagaaaacgTGCTCcctcatcaggacactgttgttcagagtaCCTAGCCAACAATAAAGCTAcagtaacacaatcacttcaacctgaagctggaaagactgcaaattaGCTGAGTTTAGTTtaaccttttttcaattgacatttttttgtacatatgccaaaaattatgccagctgattcatgattttgactggctgagaaacgctgcctgcctgtctgtctcgtcccgactcaTTCATTAgaggagatcgaatttgaatattgaaacaatgttgcaaatgtcggagagacagacagcaaggtttatacaaatctccaatGTTGAAAtcaaaatgttagtctaaaataaatgtgagataatgtccagatgctttttatagtggagatcaagtttattaattgcctggctgggctgatgagacagtggattgcacagtcatATGAAacaggcattttaacgtcatagatttagccggtggtaatttgtggaatagacactgtctggaatgcagttttaaccaatcagcattcaggattagacccacccgtagTATAATCCCTTTTAGAACAACAAATTACCCTGGCAACAGTCAACAATGACTGCCCCTCCAATTTACACATAATTGTTGAGTGGCATTTTTCTTCcacctctctcatttctctctttgccccctctctcttccccctttatCGAGACTCAGCTCGGTCACATGAGAGTGTATTCTCCCCGGCAGGCTTGCTGTAGGCATTCACCAAAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2455864 True 2465 lncRNA 0.43 2 7885523 7888068

Neighbor

gene id symbol gene type direction distance location
LOC110509578 LOC106569021 coding downstream 357315 7515012 ~ 7528208 (-)
LOC110509574 foxd1 coding downstream 381415 7502280 ~ 7504108 (-)
LOC110509571 LOC106562938 coding downstream 777034 7100019 ~ 7188516 (-)
LOC110509569 NA coding downstream 801049 7081151 ~ 7092061 (-)
LOC110509568 LOC106562935 coding downstream 812908 6999640 ~ 7072615 (-)
LOC110509579 enc1 coding upstream 1701 7889769 ~ 7901814 (-)
gfm2 gfm2 coding upstream 27317 7915385 ~ 7927945 (-)
LOC110509585 LOC106562949 coding upstream 57618 7945686 ~ 7959100 (-)
LOC110509584 LOC106562949 coding upstream 75573 7963641 ~ 7974387 (-)
LOC110509586 LOC106562956 coding upstream 252714 8130783 ~ 8168089 (-)
G2147497 NA non-coding downstream 3624 7859591 ~ 7881899 (-)
G2147423 NA non-coding downstream 59902 7778099 ~ 7825621 (-)
G2147062 NA non-coding downstream 584822 7264364 ~ 7300701 (-)
G2147060 NA non-coding downstream 603095 7279370 ~ 7282428 (-)
G2147512 NA non-coding upstream 2379 7890447 ~ 7890653 (-)
G2147513 NA non-coding upstream 2646 7890714 ~ 7890943 (-)
G2147514 NA non-coding upstream 3070 7891138 ~ 7891345 (-)
G2147515 NA non-coding upstream 3628 7891696 ~ 7891933 (-)
G2147517 NA non-coding upstream 11500 7899568 ~ 7899785 (-)
G2146036 NA other downstream 1235860 6649178 ~ 6649663 (-)
LOC110509559 NA other downstream 1291049 6579264 ~ 6594474 (-)
G2145542 NA other downstream 1632657 6137289 ~ 6252866 (-)
G2145618 LOC106591448 other downstream 1737029 6141066 ~ 6148494 (-)
G2145604 NA other downstream 1776771 6100771 ~ 6108752 (-)
ttc33 LOC106568686 other upstream 1477144 9365212 ~ 9437537 (-)
G2151189 NA other upstream 2829953 10718021 ~ 10799318 (-)
ttll11 LOC106562979 other upstream 3063181 10923070 ~ 10969315 (-)
G2151771 NA other upstream 3105098 10993166 ~ 10993879 (-)

Expression


Co-expression Network