G2148048


Basic Information

Item Value
gene id G2148048
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 8202769 ~ 8206564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2456477
CTGGTTAGTGGGTCATGTGACGCCACAAGCCACGGATGTGAAGCTGCCAATGCGAAACTGGTATACCGCTGGTTGGTGTCCTAGCGGCTGTGACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCAGTGTGCACATAACAGCGATAAAggatggtctgggggtgcagcAGTGCTGACCTACTGGTTATAGTGGGGGGCGCCACAAGCCACGATGTGAAGCTGCCAATGAGAAATTGGTATATTGGTGTCCTAGCAGATGTAACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCACAGAACGAGTCTGGCAGTGTGGGGTTGACATGGAGCCACAGGTCATTATGGGACAGGTGCTGAAGAATGACTGAAGATGAAAGGTGGCAGTACCTTAGAAGAAAGCAGATTGTTCAGTTGCTGGTCCAAGAC
>TU2456478
CTGGTTAGTGGGTCATGTGACGCCACAAGCCACGGATGTGAAGCTGCCAATGCGAAACTGGTATACCGCTGGTTGGTGTCCTAGCGGCTGTGACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCAGTGTGCACATAACAGCGATAAAggatggtctgggggtgcagcAGTGCTGACCTACTGGTTATAGTGGGGGGCGCCACAAGCCACGATGTGAAGCTGCCAATGAGAAATTGGTATATTGGTGTCCTAGCAGATGTAACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCACAGAACGAGTCTGGCAGTGTGGGGTTGACATGGAGCCACAGGTCATTGTAAGTCTGCCTCATTTGGTTATACACTGGCTAAATGTATATTGGGCTCATTGAAATCTGCCCCTTGAGGTGTTGCAGTCCGACTATGTGTTGATCCTGTGTCATGAGGGGCGGAGAGTAACCGGGCTACGTCTACGCCAAGGACCCAGGACAGTGGGTACTTGGAGTGACTATGGCGCCGATATTGGGACCCATTTTAAAGGGTTGCCAGGTTTTTAATTTTTATTCTCACCAATTTCCTCTGTTGCTAGATGGGACAGGTGCTGAAGAATGACTGAAGATGAAAGGTGGCAGTACCTTAGAAGAAAGCAGATTGTTCAGTTGCTGGTCCAAGAC
>TU2456481
CTGGTTAGTGGGTCATGTGACGCCACAAGCCACGGTAAGTCCTTGCCTCAATTGGTTATGCACTGGCTAAGTGTCTTGTTCTCCTAGCAATCTGCCCCTTGAGGTGTTGCAGTCCGACTGTACGTGTTGAGCCTGTGTCATGAGGGGCGGAGAGCGACAGGGCTATGTCTACGCCAAGGACCCAGAACAGTGGGTACTTGGAGTGATCATAGCGGCAACAGTGTATGAAATGTAATGCTGGTAAATGACGGGTTCATATCATACATTTAACGTTCCGTTTTCTCTGGTTGTCCTTAGGATGTGAAGCTGCCAATGCGAAACTGGTATACCGCTGGTTGGTGTCCTAGCGGCTGTGACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCAGTGTGCACATAACAGCGATAAAggatggtctgggggtgcagcAGTGCTGACCTACTGGTTATAGTGGGGGGCGCCACAAGCCACGATGTGAAGCTGCCAATGAGAAATTGGTATATTGGTGTCCTAGCAGATGTAACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCACAGAACGAGTCTGGCAGTGTGGGGTTGACATGGAGCCACAGGTCATTATGGGACAGGTGCTGAAGAATGACTGAAGATGAAAGGTGGCAGTACCTTAGAAGAAAGCAGATTGTTCAGTTGCTGGTCCAAGAC
>TU2456482
CTGGTTAGTGGGTCATGTGACGCCACAAGCCACGGTAAGTCCTTGCCTCAATTGGTTATGCACTGGCTAAGTGTCTTGTTCTCCTAGCAATCTGCCCCTTGAGGTGTTGCAGTCCGACTGTACGTGTTGAGCCTGTGTCATGAGGGGCGGAGAGCGACAGGGCTATGTCTACGCCAAGGACCCAGAACAGTGGGTACTTGGAGTGATCATAGCGGCAACAGTGTATGAAATGTAATGCTGGTAAATGACGGGTTCATATCATACATTTAACGTTCCGTTTTCTCTGGTTGTCCTTAGGATGTGAAGCTGCCAATGCGAAACTGGTATACCGCTGGTTGGTGTCCTAGCGGCTGTGACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCAGTGTGCACATAACAGCGATAAAggatggtctgggggtgcagcAGTGCTGACCTACTGGTTATAGTGGGGGGCGCCACAAGCCACGATGTGAAGCTGCCAATGAGAAATTGGTATATTGGTGTCCTAGCAGATGTAACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCACAGAACGAGTCTGGCAGTGTGGGGTTGACATGGAGCCACAGGTCATTGTAAGTCTGCCTCATTTGGTTATACACTGGCTAAATGTATATTGGGCTCATTGAAATCTGCCCCTTGAGGTGTTGCAGTCCGACTATGTGTTGATCCTGTGTCATGAGGGGCGGAGAGTAACCGGGCTACGTCTACGCCAAGGACCCAGGACAGTGGGTACTTGGAGTGACTATGGCGCCGATATTGGGACCCATTTTAAAGGGTTGCCAGGTTTTTAATTTTTATTCTCACCAATTTCCTCTGTTGCTAGATGGGACAGGTGCTGAAGAATGACTGAAGATGAAAGGTGGCAGTACCTTAGAAGAAAGCAGATTGTTCAGTTGCTGGTCCAAGAC
>TU2456483
CTGGTTAGTGGGTCATGTGACGCCACAAGCCACGGATGTGAAGCTGCCAATGCGAAACTGGTATACCGCTGGTTGGTGTCCTAGCGGCTGTGACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCAGTGTGCACATAACAGCGATAAAggatggtctgggggtgcagcAGTGCTGACCTACTGGTTATAGTGGGGGGCGCCACAAGCCACGTTTTCTCTGGTTGTCCTTCAGATGTGAAGCTGCCAATGAGAAATTGGTATATTGGTGTCCTAGCAGATGTAACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCACAGAACGAGTCTGGCAGTGTGGGGTTGACATGGAGCCACAGGTCATTGTAAGTCTGCCTCATTTGGTTATACACTGGCTAAATGTATATTGGGCTCATTGAAATCTGCCCCTTGAGGTGTTGCAGTCCGACTATGTGTTGATCCTGTGTCATGAGGGGCGGAGAGTAACCGGGCTACGTCTACGCCAAGGACCCAGGACAGTGGGTACTTGGAGTGACTATGGCGCCGATATTGGGACCCATTTTAAAGGGTTGCCAGGTTTTTAATTTTTATTCTCACCAATTTCCTCTGTTGCTAGATGGGACAGGTGCTGAAGAATGACTGAAGATGAAAGGTGGCAGTACCTTAGAAGAAAGCAGATTGTTCAGTTGCTGGTCCAAGAC
>TU2456480
CTGGTTAGTGGGTCATGTGACGCCACAAGCCACGGATGTGAAGCTGCCAATGCGAAACTGGTATACCGCTGGTTGGTGTCCTAGCGGCTGTGACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCAGTGTGCACATAACAGCGATAAAggatggtctgggggtgcagcAGTGCTGACCTACTGGTTATAGTGGGGGGCGCCACAAGCCACGATGTGAAGCTGCCAATGAGAAATTGGTATATTGGTGTCCTAGCAGATGTAACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCACAGAACGGTAAGCAACATCCATAGCATTTTAACTTTTTAAGTCTTAAAAGAAAATGTTTAATAGGTCTGTGATGAGAAACCATGCACCACGCTGAACTTGTGATGGATAACCTCTATACCACATTATCTGAGACCTGCAGAGACATAGTTACAAATTCACACAAGCCCTGTTAATGCTACACTGAGCAAATGAACGGGTtggtttcatgagatgaaataaaagctCGCAGAAATCTTCCATGCGCACAAGAACCTTAtttctcaaatgttttgcacaGACTTGtttatacctgttagtgagcattttccttttccaagatgatccatccacctgatatgTGACATAAGCTTctttattaaacagcatgatcattacacaggtaataAAATAAGCCGTTTTgtcaacacaatgtcacagatctCTCATGTTGAAGGAGCGCAATTAGTAtgccgactgcaggaatgtcaaccagagctgaTGCCAGATTTggatattaatttctctaccataagcagcctcCCAACATTTTAGAATTTGTCAGGACTTCCATATTTTCACCTATAGGATCTGAGACCGCTACCCAGACAGCTGAAACTGGATTTGCTCAACATTCAGTTCTGCATGGACTGTCAAACAGTCTCAGGACACTTGGGTGTCTTGACCTGACTATGCTTACCTTTGCTGGGGGAGTTGGTGTGCGAGGAGTTGGCGTGTGCCCTTCACAGGTgtatcccagtttcaactgtaccggttAGATGGCAGGTTGTGTGGGTGCGCAGTTTGATGTCAAAGTTACAAAGAGTGCCCTATGGTGGCAGTGGTGTTACGATATGGGCAACTACATACAAATTGCTGTCGATAACATGTAATTGTGTTCGAGGttccgtgatgagatcctgaagcTCGTTGTGCCGCCATCTGTCTCACCTCGTGTTTCAGCGCTAATCCATGGCCCTATGTTGtaatgatctgtacacaattcctgtgAGCTGAAATGTCCCGTTTCTTCCATGGCTTACATACACAGAGCATGTTTATGATGCTTTGTATGATTGCGTGTTCCTACAATATCATCAACTTCGAACAGGCCacactctatgcgaaggagatgttgtGATGCCTGAGGTAAATGGTTGTTGCACAAGCCTTTATCTGTGACAAATCTATTccctgtcatgtgaaatctacAGATTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2456477 False 467 lncRNA 0.51 6 8202769 8206564
TU2456478 False 718 lncRNA 0.50 5 8202769 8206564
TU2456481 False 730 lncRNA 0.50 5 8202769 8206564
TU2456482 False 981 lncRNA 0.50 4 8202769 8206564
TU2456483 False 739 lncRNA 0.50 5 8202769 8206564
TU2456480 True 1531 lncRNA 0.45 4 8203584 8206564

Neighbor

gene id symbol gene type direction distance location
LOC110509586 LOC106562956 coding downstream 34680 8130783 ~ 8168089 (-)
LOC110509584 LOC106562949 coding downstream 228382 7963641 ~ 7974387 (-)
LOC110509585 LOC106562949 coding downstream 243669 7945686 ~ 7959100 (-)
gfm2 gfm2 coding downstream 274824 7915385 ~ 7927945 (-)
LOC110509579 enc1 coding downstream 300955 7889769 ~ 7901814 (-)
LOC110509589 LOC106568849 coding upstream 2718 8209282 ~ 8216845 (-)
LOC110509590 LOC106562960 coding upstream 17814 8224378 ~ 8232643 (-)
LOC110509591 LOC106562961 coding upstream 411478 8618042 ~ 8682244 (-)
LOC110509310 LOC106562962 coding upstream 554539 8761103 ~ 8889487 (-)
LOC118945710 NA coding upstream 817231 9023795 ~ 9023922 (-)
G2148071 NA non-coding downstream 30867 8171685 ~ 8171902 (-)
G2148055 NA non-coding downstream 77117 8125066 ~ 8125652 (-)
G2147568 NA non-coding downstream 161733 8040655 ~ 8041036 (-)
G2147567 NA non-coding downstream 162389 8040170 ~ 8040380 (-)
G2148247 NA non-coding upstream 226982 8433546 ~ 8464718 (-)
G2148253 NA non-coding upstream 236468 8443032 ~ 8529631 (-)
G2148352 NA non-coding upstream 377993 8584557 ~ 8584921 (-)
G2148371 NA non-coding upstream 405443 8612007 ~ 8612250 (-)
G2146036 NA other downstream 1553106 6649178 ~ 6649663 (-)
LOC110509559 NA other downstream 1608295 6579264 ~ 6594474 (-)
G2145542 NA other downstream 1949903 6137289 ~ 6252866 (-)
G2145618 LOC106591448 other downstream 2054275 6141066 ~ 6148494 (-)
ttc33 LOC106568686 other upstream 1158648 9365212 ~ 9437537 (-)
G2151189 NA other upstream 2511457 10718021 ~ 10799318 (-)
ttll11 LOC106562979 other upstream 2744685 10923070 ~ 10969315 (-)
G2151771 NA other upstream 2786602 10993166 ~ 10993879 (-)
LOC100135966 rps27a other upstream 3035430 11241994 ~ 11244060 (-)

Expression


Co-expression Network