G2148509 (LOC106562962)


Basic Information

Item Value
gene id G2148509
gene name LOC106562962
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 8812585 ~ 8814382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2456989
GCCCGCCGCCCCGCCTCCGGCACTGGCAGATCCACCCACAGAGACGGAACCGCCCCCAACAGAAACAGAACTGCCCCCGACTGATACGGATCCCCCACCGGCACCAATTTCGAcagtactgctgctgctggttcTGCTGCCGTGGCCATCTCCGCCGAGTCCgtactcatcctcctctccctctccataggACAGGTCATAGCCCTCGCCATAGTTCCCATCGTAGGCTGTTGCTCCCTGAGAGACTGAGGTCCTGTTGCGTGTCATGGTGAATCCTCCACTAGTGGTGATGACCTTCTCAATCTCCGCCCCCGTGCCCAGGTCAACCTTTGACCCCAAGTCCAGCTCCACCCCTGCGCCCGTCCCCATGCTGCTACTGCTGATGGTGACCCTGTGAGCGACGTCGGGCAGGGCCGTGGACTCGTCGTAGTACGTCTCGTAGTTGCCGTAACCTTCCGTATCATAGTTGTCGTAACGGCTGGTATCCTCCCCAGCTCCAGCAGCAGCGGCAGCTTCAGCATTGGCGGTACTGGTCAACACTTTGCCCTCGGCTCCCTGACTGGCTGTCTCCCTTACTGATGACACCACCTCTTTGACGGAGGTGACGACACGGCCGCTCTCTGGCACGGAC

Function

NR:

description
collagen alpha-1(V) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2456989 True 631 lncRNA 0.61 2 8812585 8814382

Neighbor

gene id symbol gene type direction distance location
LOC110509587 fa69b coding upstream 611225 8173842 ~ 8201360 (+)
LOC110509309 LOC106562955 coding upstream 677272 8102932 ~ 8135313 (+)
LOC118945305 NA coding upstream 778663 8028448 ~ 8033922 (+)
LOC118945360 NA coding upstream 792004 8018456 ~ 8020581 (+)
LOC110509583 nsa2 coding upstream 879801 7928155 ~ 7932784 (+)
LOC118945282 NA coding downstream 210245 8957803 ~ 9032295 (+)
LOC110509594 rexo4 coding downstream 322909 9137291 ~ 9141371 (+)
LOC118945275 LOC107691784 coding downstream 394976 9209358 ~ 9209829 (+)
LOC110509598 pe2r4 coding downstream 546576 9309984 ~ 9366518 (+)
LOC110509604 LOC106562973 coding downstream 1249785 10064167 ~ 10309768 (+)
G2147934 NA non-coding upstream 175907 8634772 ~ 8636678 (+)
G2147939 NA non-coding upstream 195358 8616631 ~ 8617227 (+)
G2147654 NA non-coding upstream 604997 8205205 ~ 8207588 (+)
G2147598 NA non-coding upstream 641338 8136298 ~ 8171247 (+)
G2147622 NA non-coding upstream 651232 8148255 ~ 8161353 (+)
G2148525 LOC106562962 non-coding downstream 20725 8835107 ~ 8837119 (+)
G2148551 NA non-coding downstream 59667 8874049 ~ 8874489 (+)
G2148834 NA non-coding downstream 336808 9151190 ~ 9151587 (+)
G2148841 NA non-coding downstream 343665 9158047 ~ 9158274 (+)
G2148844 NA non-coding downstream 347328 9161710 ~ 9162003 (+)
G2146821 NA other upstream 812095 8000129 ~ 8000490 (+)
LOC110509307 LOC106562924 other upstream 2154061 6640782 ~ 6664348 (+)
G2145733 NA other upstream 2293445 6518690 ~ 6519140 (+)
LOC118945315 LOC106593246 other upstream 2539092 6267751 ~ 6274178 (+)
G2145368 NA other upstream 2580087 6188572 ~ 6232498 (+)
G2149183 NA other downstream 559618 9374000 ~ 9374512 (+)
G2150729 NA other downstream 1647371 10461753 ~ 10462220 (+)
G2151555 NA other downstream 2546003 11359557 ~ 11432252 (+)

Expression


Co-expression Network