G2149334 (LOC106562972)


Basic Information

Item Value
gene id G2149334
gene name LOC106562972
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 9617413 ~ 9617782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2457884
TGCAGAGAGAATAGTAGAAAAGAGTGGGGAAGAAAagtgaaggtggagaaggagatagaggatatgagaagagagaaagagagaaaatgagagaacaATAAAACACGAGAGACACAGATTAAAAATCTCCTACCTGTCTCAGGGTGGCAGGGTCCGTGCTGGTGGCAGGTGCAGGGCACACAGGGTGACAGGGGTCCTCTGTTAGGGACCTCTCTGGTGTAGCCTGGGGCACAGAGCTCACAGAACTGACCCCCAAACCCCGGGGGGCACGTACATACCTCAACCCAGGGAGCAGGGGGGGTAGAGGATGTAACAGGGCTGGAGAAGTGGGCAGCGGAGGCCAGGGTTACCCCTGAGAGTTGGGACGTGT

Function

NR:

description
laminin subunit gamma-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2457884 True 370 lncRNA 0.55 1 9617413 9617782

Neighbor

gene id symbol gene type direction distance location
LOC110509598 pe2r4 coding upstream 250895 9309984 ~ 9366518 (+)
LOC118945275 LOC107691784 coding upstream 407584 9209358 ~ 9209829 (+)
LOC110509594 rexo4 coding upstream 476042 9137291 ~ 9141371 (+)
LOC118945282 NA coding upstream 587576 8957803 ~ 9032295 (+)
LOC110509587 fa69b coding upstream 1416053 8173842 ~ 8201360 (+)
LOC110509604 LOC106562973 coding downstream 446385 10064167 ~ 10309768 (+)
zgc:63972 LOC106562974 coding downstream 855650 10473432 ~ 10496533 (+)
si:dkeyp-72a4.1 LOC106562976 coding downstream 988373 10606155 ~ 10618148 (+)
LOC110509315 LOC106562976 coding downstream 1083272 10701054 ~ 10906165 (+)
LOC110509607 LOC106562980 coding downstream 1356660 10974442 ~ 11003230 (+)
G2149242 NA non-coding upstream 159874 9453654 ~ 9457539 (+)
G2148870 NA non-coding upstream 415846 9201113 ~ 9201567 (+)
G2148857 LOC106562968 non-coding upstream 436472 9180704 ~ 9180941 (+)
G2148827 NA non-coding upstream 436924 9177170 ~ 9180489 (+)
G2149335 NA non-coding downstream 855 9618637 ~ 9619279 (+)
G2149459 NA non-coding downstream 164483 9782265 ~ 9782604 (+)
G2150621 NA non-coding downstream 768743 10386525 ~ 10386756 (+)
G2150633 NA non-coding downstream 778076 10395858 ~ 10396068 (+)
G2150635 NA non-coding downstream 781141 10398923 ~ 10399181 (+)
G2149183 NA other upstream 242901 9374000 ~ 9374512 (+)
G2146821 NA other upstream 1616923 8000129 ~ 8000490 (+)
LOC110509307 LOC106562924 other upstream 2958889 6640782 ~ 6664348 (+)
G2145733 NA other upstream 3098273 6518690 ~ 6519140 (+)
G2150729 NA other downstream 843971 10461753 ~ 10462220 (+)
G2151555 NA other downstream 1742603 11359557 ~ 11432252 (+)
G2152150 NA other downstream 2146442 11764224 ~ 11766351 (+)
G2152639 NA other downstream 2683010 12300792 ~ 12307438 (+)

Expression


Co-expression Network