G2150717


Basic Information

Item Value
gene id G2150717
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 10502671 ~ 10503922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2459324
gttttagaacacctactcattcaaggtttttctttatttttactattttctacattgtagaataatagtgaagacatgaaaactatgaaataacacatatggaatcatgtagattccccccccaaaaagtcttaaacaaatcaaaatatattttatatttgagattattcaaaatagccaccctttgccttgacagctttgtacactcttggcattctctcaaccaccgtcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgagcacttgttggaagcttttccttcactctgctgtccaactcatcccaaaccaactTAAAGGgggtgaggtcgggtgattgcggaggtcaggtcatctgaagcagcactctatgaatctccttcttggtcaaatagcccttatacagcgtgaaggtgtgttgggtcgggtcattgtcctgttgaaaaacgaattatagtcccactaagcacaaaccagatgggatggcgtatcgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatctcagacagtgtcaccagcaaagcaaccccacacaatcacacctcctcctcctccatgcttcacggtgggaaccacacatgcagagatcatcctttcacctactctgcgtctcacaaagacacagcgtttGGAACCAAAGATCTcacatttgaactcatcagaccaaaggacagatttccactggtctaatgtccattgctcgtgtttcttggcccaagcaagtctcttcttattggcgtcctttagtagtggtttcttttcagaaattcaaccatgaaggcctgattcacacagtctcctctgaacagctgatgttgagatgtgtctgttacttaaacgcTGTGAGGCATTTATTTAGAacgcaatttctgaggctggtaactctaatgaacttgtcctctgcagcagaggaaactctgggtcttcctttcctgtggcgatcctcatgatccagtttcatcatagcgtttgatggtttttgcgactgcacttgaagaaactatca
>TU2459325
gttttagaacacctactcattcaaggtttttctttatttttactattttctacattgtagaataatagtgaagacatgaaaactatgaaataacacatatggaatcatgtagattccccccccaaaaagtcttaaacaaatcaaaatatattttatatttgagattattcaaaatagccaccctttgccttgacagctttgtacactcttggcattctctcaaccaccgtcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgagcacttgttggaagcttttccttcactctgctgtccaactcatcccaaaccaactTAAAGGgggtgaggtcgggtgattgcggaggtcaggtcatctgaagcagcactctatgaatctccttcttggtcaaatagcccttatacagcgtgaaggtgtgttgggtcgggtcattgtcctgttgaaaaacgaattatagtcccactaagcacaaaccagatgggatggcgtatcgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatctcagacagtgtcaccagcaaagcaaccccacacaatcacacctcctcctcctccatgcttcacggtgggaaccacacatgcagagatcatcctttcacctactctgcgtctcacaaagacacagcgtttGGAACCAAAGATCTcacatttgaactcatcagaccaaaggacagatttccactggtctaatgtccattgctcgtgtttcttggcccaagcaagtctcttcttattggcgtcctttagtagtggtttcttttcagaaattcaaccatgaaggcctgattcacacagtctcctctgaacagctgatgttgagatgtgtctgttacttaaacgcTGTGAGGCATTTATTTAGAacgcaatttctgaggctggtaactctaatgaacttgtcctctgcagcagaggaaactctgggtcttcctttcctgtggcgatcctcatgatccagtttcatcatagcgtttgatggtttttgcgactgcacttgaagaaactatcaaagttcttgaaattgtacagcttgactgaccttcatttcttaaaataatgattgacttggg
>TU2459327
aaaaagtcttaaacaaatcaaaatatattttatatttgagattattcaaaatagccaccctttgccttgacagctttgtacactcttggcattctctcaaccaccgtcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgagcacttgttggaagcttttccttcactctgctgtccaactcatcccaaaccaactTAAAGGgggtgaggtcgggtgattgcggaggtcaggtcatctgaagcagcactctatgaatctccttcttggtcaaatagcccttatacagcgtgaaggtgtgttgggtcgggtcattgtcctgttgaaaaacgaattatagtcccactaagcacaaaccagatgggatggcgtatcgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatctcagacagtgtcaccagcaaagcaaccccacacaatcacacctcctcctcctccatgcttcacggtgggaaccacacatgcagagatcatcctttcacctactctgcgtctcacaaagacacagcgtttGGAACCAAAGATCTcacatttgaactcatcagaccaaaggacagatttccactggtctaatgtccattgctcgtgtttcttggcccaagcaagtctcttcttattggcgtcctttagtagtggtttcttttcagaaattcaaccatgaaggcctgattcacacagtctcctctgaacagctgatgttgagatgtgtctgttacttaaacgcTGTGAGGCATTTATTTAGAacgcaatttctgaggctggtaactctaatgaacttgtcctctgcagcagaggaaactctgggtcttcctttcctgtggcgatcctcatgatccagtttcatcatagcgtttgatggtttttgcgactgcacttgaagaaactatca
>TU2459328
aaaaagtcttaaacaaatcaaaatatattttatatttgagattattcaaaatagccaccctttgccttgacagctttgtacactcttggcattctctcaaccaccgtcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgagcacttgttggaagcttttccttcactctgctgtccaactcatcccaaaccaactTAAAGGgggtgaggtcgggtgattgcggaggtcaggtcatctgaagcagcactctatgaatctccttcttggtcaaatagcccttatacagcgtgaaggtgtgttgggtcgggtcattgtcctgttgaaaaacgaattatagtcccactaagcacaaaccagatgggatggcgtatcgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatctcagacagtgtcaccagcaaagcaaccccacacaatcacacctcctcctcctccatgcttcacggtgggaaccacacatgcagagatcatcctttcacctactctgcgtctcacaaagacacagcgtttGGAACCAAAGATCTcacatttgaactcatcagaccaaaggacagatttccactggtctaatgtccattgctcgtgtttcttggcccaagcaagtctcttcttattggcgtcctttagtagtggtttcttttcagaaattcaaccatgaaggcctgattcacacagtctcctctgaacagctgatgttgagatgtgtctgttacttaaacgcTGTGAGGCATTTATTTAGAacgcaatttctgaggctggtaactctaatgaacttgtcctctgcagcagaggaaactctgggtcttcctttcctgtggcgatcctcatgatccagtttcatcatagcgtttgatggtttttgcgactgcacttgaagaaactatcaaagttcttgaaattgtacagcttgactgaccttcatttcttaaaataatgattgacttggggggggggtgaatagttctGTATGCccatgttttatgtttttttttgttatttcttgtttgtttcacaataaaaaatattttgcatcttcaaagtggtaggcatgttttgtaaatca
>TU2459330
aaaaagtcttaaacaaatcaaaatatattttatatttgagattattcaaaatagccaccctttgccttgacagctttgtacactcttggcattctctcaaccaccgtcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgagcacttgttggaagcttttccttcactctgctgtccaactcatcccaaaccaactTAAAGGgggtgaggtcgggtgattgcggaggtcaggtcatctgaagcagcactctatgaatctccttcttggtcaaatagcccttatacagcgtgaaggtgtgttgggtcgggtcattgtcctgttgaaaaacgaattatagtcccactaagcacaaaccagatgggatggcgtatcgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatctcagacagtgtcaccagcaaagcaaccccacacaatcacacctcctcctcctccatgcttcacggtgggaaccacacatgcagagatcatcctttcacctactctgcgtctcacaaagacacagcgtttGGAACCAAAGATCTcacatttgaactcatcagaccaaaggacagatttccactggtctaatgtccattgctcgtgtttcttggcccaagcaagtctcttcttattggcgtcctttagtagtggtttcttttcagaaattcaaccatgaaggcctgattcacacagtctcctctgaacagctgatgttgagatgtgtctgttacttaaacgcTGTGAGGCATTTATTTAGAacgcaatttctgaggctggtaactctaatgaacttgtcctctgcagcagaggaaactctgggtcttcctttcctgtggcgatcctcatgatccagtttcatcatagcgtttgatggtttttgcgactgcacttgaagaaactatcaaagttcttgaaattgtacagcttgactgaccttcatttcttaaaataatgattgacttggg
>TU2459326
cattctctcaaccaccgtcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgagcacttgttggaagcttttccttcactctgctgtccaactcatcccaaaccaactTAAAGGgggtgaggtcgggtgattgcggaggtcaggtcatctgaagcagcactctatgaatctccttcttggtcaaatagcccttatacagcgtgaaggtgtgttgggtcgggtcattgtcctgttgaaaaacgaattatagtcccactaagcacaaaccagatgggatggcgtatcgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatctcagacagtgtcaccagcaaagcaaccccacacaatcacacctcctcctcctccatgcttcacggtgggaaccacacatgcagagatcatcctttcacctactctgcgtctcacaaagacacagcgtttGGAACCAAAGATCTcacatttgaactcatcagaccaaaggacagatttccactggtctaatgtccattgctcgtgtttcttggcccaagcaagtctcttcttattggcgtcctttagtagtggtttcttttcagaaattcaaccatgaaggcctgattcacacagtctcctctgaacagctgatgttgagatgtgtctgttacttaaacgcTGTGAGGCATTTATTTAGAacgcaatttctgaggctggtaactctaatgaacttgtcctctgcagcagaggaaactctgggtcttcctttcctgtggcgatcctcatgatccagtttcatcatagcgtttgatggtttttgcgactgcacttgaagaaactatca
>TU2459329
cattctctcaaccaccgtcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgagcacttgttggaagcttttccttcactctgctgtccaactcatcccaaaccaactTAAAGGgggtgaggtcgggtgattgcggaggtcaggtcatctgaagcagcactctatgaatctccttcttggtcaaatagcccttatacagcgtgaaggtgtgttgggtcgggtcattgtcctgttgaaaaacgaattatagtcccactaagcacaaaccagatgggatggcgtatcgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatctcagacagtgtcaccagcaaagcaaccccacacaatcacacctcctcctcctccatgcttcacggtgggaaccacacatgcagagatcatcctttcacctactctgcgtctcacaaagacacagcgtttGGAACCAAAGATCTcacatttgaactcatcagaccaaaggacagatttccactggtctaatgtccattgctcgtgtttcttggcccaagcaagtctcttcttattggcgtcctttagtagtggtttcttttcagaaattcaaccatgaaggcctgattcacacagtctcctctgaacagctgatgttgagatgtgtctgttacttaaacgcTGTGAGGCATTTATTTAGAacgcaatttctgaggctggtaactctaatgaacttgtcctctgcagcagaggaaactctgggtcttcctttcctgtggcgatcctcatgatccagtttcatcatagcgtttgatggtttttgcgactgcacttgaagaaactatcaaagttcttgaaattgtacagcttgactgaccttcatttcttaaaataatgattgacttggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2459324 False 1075 lncRNA 0.43 1 10502671 10503745
TU2459325 False 1136 lncRNA 0.43 1 10502671 10503806
TU2459327 False 952 lncRNA 0.45 1 10502794 10503745
TU2459328 False 1129 lncRNA 0.43 1 10502794 10503922
TU2459330 False 1013 lncRNA 0.44 1 10502794 10503806
TU2459326 False 863 lncRNA 0.46 1 10502883 10503745
TU2459329 True 924 lncRNA 0.45 1 10502883 10503806

Neighbor

gene id symbol gene type direction distance location
zgc:63972 LOC106562974 coding upstream 6138 10473432 ~ 10496533 (+)
LOC110509604 LOC106562973 coding upstream 192903 10064167 ~ 10309768 (+)
LOC110509598 pe2r4 coding upstream 1136153 9309984 ~ 9366518 (+)
LOC118945275 LOC107691784 coding upstream 1292842 9209358 ~ 9209829 (+)
LOC110509594 rexo4 coding upstream 1361300 9137291 ~ 9141371 (+)
si:dkeyp-72a4.1 LOC106562976 coding downstream 102233 10606155 ~ 10618148 (+)
LOC110509315 LOC106562976 coding downstream 197132 10701054 ~ 10906165 (+)
LOC110509607 LOC106562980 coding downstream 470520 10974442 ~ 11003230 (+)
LOC110509610 LOC106562982 coding downstream 517148 11021070 ~ 11022671 (+)
LOC110509611 LOC106562983 coding downstream 521827 11025749 ~ 11044674 (+)
G2150699 NA non-coding upstream 63910 10438445 ~ 10438761 (+)
G2150683 NA non-coding upstream 72137 10430228 ~ 10430534 (+)
G2150667 NA non-coding upstream 79901 10422474 ~ 10422770 (+)
G2150653 NA non-coding upstream 90973 10410980 ~ 10411698 (+)
G2150639 NA non-coding upstream 101398 10401056 ~ 10401273 (+)
G2150903 NA non-coding downstream 149005 10652927 ~ 10653402 (+)
G2150904 LOC106597055 non-coding downstream 151141 10655063 ~ 10655524 (+)
G2150910 NA non-coding downstream 173116 10677038 ~ 10677816 (+)
G2150914 NA non-coding downstream 177888 10681810 ~ 10682144 (+)
G2150918 NA non-coding downstream 188338 10692260 ~ 10692464 (+)
G2150729 NA other upstream 40451 10461753 ~ 10462220 (+)
G2149183 NA other upstream 1128159 9374000 ~ 9374512 (+)
LOC118945282 NA other upstream 1470376 8957803 ~ 9032295 (+)
G2146821 NA other upstream 2502181 8000129 ~ 8000490 (+)
G2151555 NA other downstream 856463 11359557 ~ 11432252 (+)
G2152150 NA other downstream 1260302 11764224 ~ 11766351 (+)
G2152639 NA other downstream 1796870 12300792 ~ 12307438 (+)
G2153316 NA other downstream 2255958 12759880 ~ 12760490 (+)
G2154294 NA other downstream 3164367 13668289 ~ 13669170 (+)

Expression


Co-expression Network