Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_004048 |
| gene name | NA |
| gene type | non-coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 15311381 ~ 15313599 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0022402 | cell cycle process | biological_process |
| GO:0006974 | cellular response to DNA damage stimulus | biological_process |
| GO:0007049 | cell cycle | biological_process |
| GO:0006259 | DNA metabolic process | biological_process |
| GO:0006261 | DNA-dependent DNA replication | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0072686 | mitotic spindle | cellular_component |
| GO:0044422 | obsolete organelle part | cellular_component |
| GO:0044424 | obsolete intracellular part | cellular_component |
| GO:0044446 | obsolete intracellular organelle part | cellular_component |
| GO:0005813 | centrosome | cellular_component |
| GO:0005815 | microtubule organizing center | cellular_component |
| GO:0005819 | spindle | cellular_component |
| GO:0015630 | microtubule cytoskeleton | cellular_component |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0043226 | organelle | cellular_component |
| GO:0043229 | intracellular organelle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0004519 | endonuclease activity | molecular_function |
| GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00008460 | True | 1438 | lncRNA | 0.40 | 2 | 15311381 | 15313599 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_004047 | rpn2 | coding | downstream | 14171 | 15225534 ~ 15297210 (-) |
| XLOC_004046 | slc1a8a | coding | downstream | 220817 | 15068307 ~ 15090564 (-) |
| XLOC_004045 | CR550302.1 | coding | downstream | 291854 | 15018138 ~ 15019527 (-) |
| XLOC_004044 | elavl1b | coding | downstream | 309669 | 14955484 ~ 15001712 (-) |
| XLOC_004043 | si:dkey-6d5.1 | coding | downstream | 387243 | 14915780 ~ 14924138 (-) |
| XLOC_004049 | ghrh | coding | upstream | 32055 | 15345654 ~ 15435495 (-) |
| XLOC_004050 | NA | coding | upstream | 443127 | 15756726 ~ 15761871 (-) |
| XLOC_004051 | FP016142.5 | coding | upstream | 461853 | 15775452 ~ 15780923 (-) |
| XLOC_004052 | FP016142.4 | coding | upstream | 482494 | 15796093 ~ 15797568 (-) |
| XLOC_004053 | FP016142.3 | coding | upstream | 484659 | 15798258 ~ 15799923 (-) |
| XLOC_004019 | CR450764.8 | misc | downstream | 2619690 | 12691395 ~ 12691691 (-) |
| XLOC_004015 | CR450764.4 | misc | downstream | 2689614 | 12621518 ~ 12621767 (-) |
| XLOC_004013 | CABZ01022569.1 | misc | downstream | 2720085 | 12590999 ~ 12591296 (-) |
| XLOC_004008 | BX000700.19 | misc | downstream | 2798119 | 12512966 ~ 12513262 (-) |
| XLOC_004006 | BX000700.27 | misc | downstream | 2811119 | 12499966 ~ 12500262 (-) |
| XLOC_004063 | CR854846.1 | misc | upstream | 813783 | 16127382 ~ 16127678 (-) |
| XLOC_004042 | NA | non-coding | downstream | 437251 | 14873329 ~ 14874130 (-) |
| XLOC_004041 | CU019562.1 | non-coding | downstream | 482057 | 14827374 ~ 14829324 (-) |
| XLOC_004039 | NA | non-coding | downstream | 552293 | 14754905 ~ 14759088 (-) |
| XLOC_004038 | CR550307.1 | non-coding | downstream | 615517 | 14693481 ~ 14695864 (-) |
| XLOC_004054 | FP016142.7 | non-coding | upstream | 488851 | 15802450 ~ 15803637 (-) |
