G2151776 (LOC106562980)


Basic Information

Item Value
gene id G2151776
gene name LOC106562980
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11001048 ~ 11002027 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2460477
GGGGGTTAACAAGTAGAGGTTAGTGGGTACAGATAGGGTATGTACATTTGGTTTGAAGGGTGGCTCAATGACTCCGGCGtccagcctcctgaagttgatgGTGCTGAAGAAGGGATGGGACTTGACCCCTTCCACCCCACACCTTCGACACCCTAACCTCTGTCTCGGGTCTTTGGTCAACAGCTGAGAGAGCGGTGGGGGGTGAAAGAGAAAGAttagtgagagcgagagagagaaaagcaccGATGCAGTTCTAATATAGAACTATAGGTAACtgctaaaataaaggaaacacttgagtgtattgaaagcaggtgcttccacacgtGGTCCCTGACCCATGCTTTGGGTCATGTATATAAATGCCCAGTTGTCCATTATAAGAGATCTTAGTGACTTTCAAAGGAGCATTAAAGGTTGTCTCTGTCACCAGATCTTAACCCAataacacttatgggagattctggagtggtgcctgagacagtgttttccaccaccatcaacaaaataccaaattatggaatttctcaggGGGGAAATGGTGTTGCATCCTTCCATCAGAGtttcagacacttgtagaatctatgccaaggcgcattgaatcTGTTCTGATGGCtggtggtggcccaacgccctattaagacacattgttggtgtttcctttatgttgacagttacatttacatttgaactACATTTAGTTGACAAGCTTCAGGTCAAAGCTGAGCAAAAGTCTAGTCTCACAGAGCGGCAGAAGTCTTCTGTCTCGCTGCTAAATGTCTTCCTGTACACCTCCTCCGTCTCCTgtatccttctctccatctcttttgcTGTCAATTGCTCCCCTTGTCTCTTGAATGGGGATCGTCCGGCCGTCATCTCGTACACAAGGCAGCCCAGGCCCCACCAATCAGGGCTTATCCCGTAGTACTCATGGCCAATCACCTCTGGAGCTGAGGGAAAGAGGGACGGGTTTGGAA

Function

NR:

description
G protein-coupled receptor kinase 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2460477 True 980 lncRNA 0.47 1 11001048 11002027

Neighbor

gene id symbol gene type direction distance location
ttll11 LOC106562979 coding downstream 31733 10923070 ~ 10969315 (-)
LOC110509356 NA coding downstream 943279 10051204 ~ 10057769 (-)
lamc3 LOC106562972 coding downstream 1240140 9510367 ~ 9760908 (-)
aif1l LOC106562971 coding downstream 1499629 9461338 ~ 9501419 (-)
LOC100653467 prkaa1 coding downstream 1543529 9444050 ~ 9457519 (-)
LOC110509609 LOC106562981 coding upstream 2063 11004090 ~ 11018061 (-)
ddx56 ddx56 coding upstream 44290 11046317 ~ 11053829 (-)
LOC110509316 LOC106563014 coding upstream 137395 11139422 ~ 11159002 (-)
LOC118945308 NA coding upstream 188543 11190570 ~ 11193499 (-)
LOC110509613 LOC106562989 coding upstream 213451 11215478 ~ 11218956 (-)
G2151773 NA non-coding downstream 5981 10994862 ~ 10995067 (-)
G2151766 NA non-coding downstream 13534 10987282 ~ 10987514 (-)
G2151742 NA non-coding downstream 63166 10937571 ~ 10937882 (-)
G2151741 NA non-coding downstream 65357 10935461 ~ 10935691 (-)
G2151740 NA non-coding downstream 66255 10934580 ~ 10934793 (-)
G2151821 NA non-coding upstream 106735 11108762 ~ 11112463 (-)
G2151827 NA non-coding upstream 112007 11114034 ~ 11114383 (-)
G2151835 NA non-coding upstream 121699 11123726 ~ 11123978 (-)
G2151839 NA non-coding upstream 125575 11127602 ~ 11127803 (-)
G2151802 NA non-coding upstream 130113 11132140 ~ 11132494 (-)
G2151771 NA other downstream 7169 10993166 ~ 10993879 (-)
G2151189 NA other downstream 201730 10718021 ~ 10799318 (-)
ttc33 LOC106568686 other downstream 1563511 9365212 ~ 9437537 (-)
LOC110509586 LOC106562956 other downstream 2833017 8130783 ~ 8168089 (-)
LOC100135966 rps27a other upstream 239967 11241994 ~ 11244060 (-)
LOC110509625 LOC106568355 other upstream 454591 11456618 ~ 11525214 (-)
G2152107 NA other upstream 720045 11722072 ~ 11722479 (-)
atg10 atg10 other upstream 939435 11940630 ~ 11945825 (-)
G2153174 NA other upstream 1647149 12649176 ~ 12649495 (-)

Expression


Co-expression Network