G2151799



Basic Information


Item Value
gene id G2151799
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11132594 ~ 11133696 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU2460512
ATCTTGGCGGGGTCCAATCTTATCCACAGAGATCAATGTGGACTTATGCTTTTGTTTTTTGCAACCagtacacacctgattcaactaatcaactaACCACAGACTTCAATCAAGACACgattagctgaatcaggtgtgttactgcTTGGTTGGAAGACAAACCCGCAGCCACACCGGCCCCTCTGTGTATAAGAAGCAACGCTCAAAGACCATAAAACTCACAATTGTCAACGGATTATCTGAAAGCTGAATAACATTTAATGTACTGCTAAACTTGTTAATTAGTTCAACTTGTCTTCCTTAAGCCTGTCTGAAGACAGTTTCAAATCTCCCTCTGAAGACAGTTTCAAATCTCCCTCTGAAGACAGTTTCAAATCTCCCTCTGCTGTGTATAAAAAAATGTACAGGTGGTGGACCCAAAAACAGAATCACCTGGATGAATGAAGGACAACAATATGACAATGCCCCCACTCAAACGTGAATGAGTAGTCACCCAAAATCTTATTGTCCCTCGTTTGTTTGCATTTTTGTCCACCACTTGTAGTCAATTTATTTATCATCATTTACATTCTGTATAGAGGGAGTGATCTCTGTGCTACTTAATCTTTTAAACCCACCTAAGataaatgtcatattttttttaaatggcgtCTATGCATAACAATGCACGGTTCATTTAACAGTAAAATatgagaaaatgtatttaaaaatgtaaGCTGTGAATGCCTGAAATGTAACATCTTGTAGTTCACTAAGTTATGTTGGAACATTAAATAGGAGAAAATCTTAGTTTTGAGTGGGCTTAATGGGTATGTGGGCTTAATAGGTACGCTTACCCTAAATGTGCAGAGGTAAAATGGAGAAACACATGGTAGTATGTGACTTAGTATGTGTCTGTGCtttcatgtgtgtatgtgtcatgtacagtatgtatgtgctGTATATACATGTTCGGTTGACACAAACAGTGGCACTGGAAGTCTCTGCCACAGCGGTCAGGGTAGGGACTGTTATCCCCTCTGTGTGTTGGTGGAAGACATCTTTCACAGCCAGGT

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU2460512 True 1055 lncRNA 0.39 2 11132594 11133696

Neighbor


gene id symbol gene type direction distance location
ddx56 ddx56 coding downstream 78765 11046317 ~ 11053829 (-)
LOC110509609 LOC106562981 coding downstream 114533 11004090 ~ 11018061 (-)
ttll11 LOC106562979 coding downstream 163279 10923070 ~ 10969315 (-)
LOC110509356 NA coding downstream 1074825 10051204 ~ 10057769 (-)
lamc3 LOC106562972 coding downstream 1371686 9510367 ~ 9760908 (-)
LOC110509316 LOC106563014 coding upstream 5726 11139422 ~ 11159002 (-)
LOC118945308 NA coding upstream 56874 11190570 ~ 11193499 (-)
LOC110509613 LOC106562989 coding upstream 81782 11215478 ~ 11218956 (-)
LOC100136736 LOC100136736 coding upstream 99302 11232998 ~ 11236337 (-)
LOC100135966 rps27a coding upstream 108298 11241994 ~ 11244060 (-)
G2151802 NA non-coding downstream 100 11132140 ~ 11132494 (-)
G2151839 NA non-coding downstream 4791 11127602 ~ 11127803 (-)
G2151835 NA non-coding downstream 8616 11123726 ~ 11123978 (-)
G2151827 NA non-coding downstream 18211 11114034 ~ 11114383 (-)
G2151821 NA non-coding downstream 20131 11108762 ~ 11112463 (-)
G2151845 NA non-coding upstream 106077 11239773 ~ 11240108 (-)
G2151846 NA non-coding upstream 106516 11240212 ~ 11240547 (-)
G2151894 NA non-coding upstream 111540 11245236 ~ 11252463 (-)
LOC110509360 myo18b non-coding upstream 183903 11315643 ~ 11347641 (-)
LOC110512753 LOC106568375 non-coding upstream 219538 11351194 ~ 11448019 (-)
G2151771 NA other downstream 138715 10993166 ~ 10993879 (-)
G2151189 NA other downstream 333276 10718021 ~ 10799318 (-)
ttc33 LOC106568686 other downstream 1695057 9365212 ~ 9437537 (-)
LOC110509586 LOC106562956 other downstream 2964563 8130783 ~ 8168089 (-)
LOC110509625 LOC106568355 other upstream 322922 11456618 ~ 11525214 (-)
G2152107 NA other upstream 588376 11722072 ~ 11722479 (-)
atg10 atg10 other upstream 807766 11940630 ~ 11945825 (-)
G2153174 NA other upstream 1515480 12649176 ~ 12649495 (-)

Expression



Co-expression Network