G2151430 (ubb)


Basic Information

Item Value
gene id G2151430
gene name ubb
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11241994 ~ 11243137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2460092
TCAGGAATGCTTGAACTTTATTGAAATTTAAAGGAATGAAGAGCTGGGATGTGAGGTTAGGGGAGAGGGGAAAGTCAGAGGGTGGGGTTAGAGGGAAGAAGCGGTCAATGGGTGGGATTGAGATTAAGATGGGGGTTAAGATGAGACATCGTTAAGAGCAGAGGAGAAGCTGCTTAGTTGCCACCACGGAGACGCAGGACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTCACGAAGATCTGCATACCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTCCAGCTGCTTACCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCGGTAAGTGTCTTCACAAAGATCTGCATCTTGACACTAAGAtagataaaataaatatattagaaTAAACTGCTCCCAAGAA

Function

symbol description
ubb Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to several human genes including UBC (ubiquitin C).

NR:

description
putative ubiquitin C variant 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2460092 True 688 lncRNA 0.52 2 11241994 11243137

Neighbor

gene id symbol gene type direction distance location
LOC118945263 NA coding upstream 13373 11225076 ~ 11228621 (+)
LOC110509615 LOC106562990 coding upstream 26633 11206996 ~ 11215361 (+)
LOC110509317 LOC106562986 coding upstream 37703 11168585 ~ 11204291 (+)
LOC100136324 sr-bi coding upstream 129531 11076465 ~ 11112463 (+)
LOC110509611 LOC106562983 coding upstream 197320 11025749 ~ 11044674 (+)
LOC110509616 LOC106563016 coding downstream 67320 11310457 ~ 11313974 (+)
trnaa-ugc-223 NA coding downstream 96162 11339299 ~ 11339370 (+)
LOC110509623 crybb1 coding downstream 203257 11446394 ~ 11458975 (+)
LOC110509620 LOC106563087 coding downstream 216788 11459925 ~ 11464582 (+)
LOC118945340 NA coding downstream 293134 11536271 ~ 11560808 (+)
G2151436 NA non-coding upstream 1328 11239773 ~ 11240666 (+)
G2151469 NA non-coding upstream 6787 11235002 ~ 11235207 (+)
G2151468 NA non-coding upstream 7290 11234476 ~ 11234704 (+)
G2151466 NA non-coding upstream 10775 11231012 ~ 11231219 (+)
G2151424 NA non-coding upstream 97236 11140754 ~ 11144758 (+)
G2151474 NA non-coding downstream 57944 11301081 ~ 11356812 (+)
G2151471 NA non-coding downstream 110168 11353305 ~ 11354556 (+)
G2151557 NA non-coding downstream 116045 11359182 ~ 11399244 (+)
G2151555 NA non-coding downstream 116420 11359557 ~ 11432252 (+)
G2151568 NA non-coding downstream 168793 11411930 ~ 11412401 (+)
G2150729 NA other upstream 779774 10461753 ~ 10462220 (+)
LOC110509604 LOC106562973 other upstream 932915 10064167 ~ 10309768 (+)
G2149183 NA other upstream 1867482 9374000 ~ 9374512 (+)
LOC118945282 NA other upstream 2209699 8957803 ~ 9032295 (+)
G2146821 NA other upstream 3241504 8000129 ~ 8000490 (+)
G2152150 NA other downstream 521087 11764224 ~ 11766351 (+)
G2152639 NA other downstream 1057655 12300792 ~ 12307438 (+)
G2153316 NA other downstream 1516743 12759880 ~ 12760490 (+)
G2154294 NA other downstream 2425152 13668289 ~ 13669170 (+)

Expression


Co-expression Network