G2151471


Basic Information

Item Value
gene id G2151471
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11353305 ~ 11354556 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2460135
ACGGACAAAAGAAAATGATGTATTTATTTCTGAACTGTTTTATATAAGCAGTCCAACACATAATGCTCCTAGCGGTCTTAAAAACAACATGACAAAATTCATTCAAACAAAATGGAATGACAATAATCATTTAATAATATTACCAATGACAGTAATCATCATCGTCATGACTGTAATGGTAATAGTAACCCAACGCCAGTAGTATTTGCGTTGTTTGTGGCACGTGTCAAATCATTTGTCTGGCCGCGTGTAAAACTGGAGTATTCTACAGCGCGAGCCCTGGCGAGAGCCCTGGCGAGAGCTCGTAGACAGAGGCcgctatccccccccccccccccctccaaaaacaAAACACGCAATAAATATGAAAAGAGCAAGAGTCCGGGTATTCAAACAAAAATAATCTGACAATTTGCAGGTACAGCTAAAGTCCTTATGTGCAAAGATCCAAAGTGTTCACCACAAACAGATTTACACACTTCTAAACCCCAACACTCACACAGAGCATCCTCATGCGAAGAGCGTCTCCACATCGTGAAATCTTCTTAAATAAACCTAGAGCATTTGTCATttaatatacacacatatattcattcatatatatatatatacttcaaTTTTTTGTTAGTTTTTCTTCTTCCTATATGCCGCCCCTTTTCATTGTCTTGTTTTGTTGTCAAGCttgtgtgtgtagatgtttgACAAAAACATCTACACTAAATAAAACACTGACAAGCGATTGAAATGCagcacacacactgaatacacccATTACAACcaagtcctgtgtgtgtgtgtgtgtgacaagtgGAGGTGCTGAAAGGCAGATTCACTccatgctgacacacacacacacacacacacacactcactcttctATTCCACATCCCCAGTTCGGTCACAGTTTTGTACCCTTTAAGAAAGACCCACTCCTCAGATTCAAACggttgagagagagtgtgtgtgtgtgtgtgtgtggccagagGCTGGCGCTGTGAGGGGTCCGTCCCCGCAGGGGCCTGTTCAGATAGGAGGATTCTCATTGGTCCAGaacagtcagccaatcagaatcaATCAGCGACAGGTATTTGGCACATTGAACATGGAGTAACACAttaggttaaaaaggtcagacaAAACCCCATTCGTTTTGGTTTAACAAGAAGAAAAAAAGGACGCCCTGATGAGGTATCTCTCTAAAACGACATCACTTCCCCTGACTGACCTG
>TU2460136
ACGGACAAAAGAAAATGATGTATTTATTTCTGAACTGTTTTATATAAGCAGTCCAACACATAATGCTCCTAGCGGTCTTAAAAACAACATGACAAAATTCATTCAAACAAAATGGAATGACAATAATCATTTAATAATATTACCAATGACAGTAATCATCATCGTCATGACTGTAATGGTAATAGTAACCCAACGCCAGTAGTATTTGCGTTGTTTGTGGCACGTGTCAAATCATTTGTCTGGCCGCGTGTAAAACTGGAGTATTCTACAGCGCGAGCCCTGGCGAGAGCTCGTAGACAGAGGCcgctatccccccccccccccccctccaaaaacaAAACACGCAATAAATATGAAAAGAGCAAGAGTCCGGGTATTCAAACAAAAATAATCTGACAATTTGCAGGTACAGCTAAAGTCCTTATGTGCAAAGATCCAAAGTGTTCACCACAAACAGATTTACACACTTCTAAACCCCAACACTCACACAGAGCATCCTCATGCGAAGAGCGTCTCCACATCGTGAAATCTTCTTAAATAAACCTAGAGCATTTGTCATttaatatacacacatatattcattcatatatatatatatacttcaaTTTTTTGTTAGTTTTTCTTCTTCCTATATGCCGCCCCTTTTCATTGTCTTGTTTTGTTGTCAAGCttgtgtgtgtagatgtttgACAAAAACATCTACACTAAATAAAACACTGACAAGCGATTGAAATGCagcacacacactgaatacacccATTACAACcaagtcctgtgtgtgtgtgtgtgtgacaagtgGAGGTGCTGAAAGGCAGATTCACTccatgctgacacacacacacacacacacacacactcactcttctATTCCACATCCCCAGTTCGGTCACAGTTTTGTACCCTTTAAGAAAGACCCACTCCTCAGATTCAAACggttgagagagagtgtgtgtgtgtgtgtgtgtggccagagGCTGGCGCTGTGAGGGGTCCGTCCCCGCAGGGGCCTGTTCAGATAGGAGGATTCTCATTGGTCCAGaacagtcagccaatcagaatcaATCAGCGACAGGTATTTGGCACATTGAACATGGAGTAACACAttaggttaaaaaggtcagacaAAACCCCATTCGTTTTGGTTTAACAAGAAGAAAAAAAGGACGCCCTGATGAGGTATCTCTCTAAAACGACATCACTTCCCCTGACTGACCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2460135 False 1228 lncRNA 0.42 2 11353305 11354556
TU2460136 True 1216 lncRNA 0.42 2 11353305 11354556

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-223 NA coding upstream 13935 11339299 ~ 11339370 (+)
LOC110509616 LOC106563016 coding upstream 39331 11310457 ~ 11313974 (+)
LOC118945263 NA coding upstream 124684 11225076 ~ 11228621 (+)
LOC110509615 LOC106562990 coding upstream 137944 11206996 ~ 11215361 (+)
LOC110509317 LOC106562986 coding upstream 149014 11168585 ~ 11204291 (+)
LOC110509623 crybb1 coding downstream 91838 11446394 ~ 11458975 (+)
LOC110509620 LOC106563087 coding downstream 105369 11459925 ~ 11464582 (+)
LOC118945340 NA coding downstream 181715 11536271 ~ 11560808 (+)
LOC118945334 NA coding downstream 206356 11560912 ~ 11570700 (+)
LOC110509626 LOC106563084 coding downstream 231976 11586532 ~ 11634525 (+)
G2151430 ubb non-coding upstream 110168 11241994 ~ 11243137 (+)
G2151436 NA non-coding upstream 112639 11239773 ~ 11240666 (+)
G2151469 NA non-coding upstream 118098 11235002 ~ 11235207 (+)
G2151468 NA non-coding upstream 118601 11234476 ~ 11234704 (+)
G2151466 NA non-coding upstream 122086 11231012 ~ 11231219 (+)
G2151557 NA non-coding downstream 4626 11359182 ~ 11399244 (+)
G2151555 NA non-coding downstream 5001 11359557 ~ 11432252 (+)
G2151568 NA non-coding downstream 57374 11411930 ~ 11412401 (+)
G2151577 NA non-coding downstream 71316 11425872 ~ 11437818 (+)
G2151603 jelt non-coding downstream 110288 11464844 ~ 11467954 (+)
G2150729 NA other upstream 891085 10461753 ~ 10462220 (+)
LOC110509604 LOC106562973 other upstream 1044226 10064167 ~ 10309768 (+)
G2149183 NA other upstream 1978793 9374000 ~ 9374512 (+)
LOC118945282 NA other upstream 2321010 8957803 ~ 9032295 (+)
G2146821 NA other upstream 3352815 8000129 ~ 8000490 (+)
G2152150 NA other downstream 409668 11764224 ~ 11766351 (+)
G2152639 NA other downstream 946236 12300792 ~ 12307438 (+)
G2153316 NA other downstream 1405324 12759880 ~ 12760490 (+)
G2154294 NA other downstream 2313733 13668289 ~ 13669170 (+)

Expression


Co-expression Network