G2152054


Basic Information

Item Value
gene id G2152054
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11623592 ~ 11628058 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2460800
ACATATTGGCCCATGATCTCCCTGCGTTCGATGGGGTCGTCGAGCGGGGTGAGTGACAGGTCGGCGATGGAGACGTGTGAAGAGGCTGTCAGAGTGAGCAGCAGCACCACAGAGCCCCGGGACTCCTCCAACGCCAGCTCTAACCGATGGGTGTGTTCCTTAGCAAGGGTGGACAAGTCTAATGTACAGCTGaaagagtcacacacacagagttacatacacacacacgtactcagTGGGGACGACATGCAgctagaaaacacacacacacacacacacacacacacaaacagagttaaatacacacacacacacacacacacacacacacatttaacattcaccataccagctcctcgttagtatagtggtgagtatccccgcctgtcacgcgggagaccggggttcaattccctgacggggagaaaggactgcttttttttttagggtgaacaatgtagctgaggccactatgcgaaaaatatgcttggagataaagctttatgatacgatttccagcattatctcagtattccaaggcattggttgttcagtggtagactgaagactttggtgaatccattgtagatgtccagtgtgtgaggtgatttactttgtgcaaggctttagttgttaaatgggaaacgagtaaccaactagtcatcgacaactgtcttgagtttggcatttgtgacaatgtccttaaatacacacacacagaaagttaaatacacacacacacacagttaaacacacacacacacacagttaaatacacacacacacacactcagtgggGACGACATGTAACTAGAAAACAcatacaccgacacacacacaaacagactcaCCGTCCTATGAAGTCATCCCTGCGTCCTGTATCTTTGTCCCAGACTGCAATTTCCAgcactcctcctgtctcttcataCAGGTGCAGATCAAACTGCTCTCTCCACTGGGGACACAGCGTCTTAGGCATGGTCtacggggagaaagagagacgctGATGACCTGTgcgtgcgcgtgcatgtgtgtatgtcgCGTCTGTACCTTGCTCCTGTACTTCTGGTTTCCCAGTCTGAACTTCGCATAGGGGTCACTGAGGCCATTGGGGTCCATGGGACAAAGGTCACGACCTTCGATCAGAGAGATGCTGACGATGCCTCTCCACAGCTGGTGCTTACGGTGCAGCTCTGCCA
>TU2460801
ACATATTGGCCCATGATCTCCCTGCGTTCGATGGGGTCGTCGAGCGGGGTGAGTGACAGGTCGGCGATGGAGACGTGTGAAGAGGCTGTCAGAGTGAGCAGCAGCACCACAGAGCCCCGGGACTCCTCCAACGCCAGCTCTAACCGATGGGTGTGTTCCTTAGCAAGGGTGGACAAGTCTAATGTACAGCTGaaagagtcacacacacagagttacatacacacacacgtactcagTGGGGACGACATGCAgctagaaaacacacacacacacacacacacacacaaacaaagataaatacacacacacacacacacacatttaacattcaccataccagctcctcgttagtatagtggtgagtatccccgcctgtcacgcgggagaccggggttcaattccctgacggggagaaaggactgcttttttttttagggtgaacaatgtagctgaggccactatgcgaaaaatatgcttggagataaagctttatgatacgatttccagcattatctcagtattccaaggcattggttgttcagtggtagactgaagactttggtgaatccattgtagatgtccagtgtgtgaggtgatttactttgtgcaaggctttagttgttaaatgggaaacgagtaaccaactagtcatcgacaactgtcttgagtttggcatttgtgacaatgtccttaaatacacacacacagaaagttaaatacacacacacacacagttaaacacacacacacacacagttaaatacacacacacacacactcagtgggGACGACATGTAACTAGAAAACAcatacaccgacacacacacaaacagactcaCCGTCCTATGAAGTCATCCCTGCGTCCTGTATCTTTGTCCCAGACTGCAATTTCCAgcactcctcctgtctcttcataCAGGTGCAGATCAAACTGCTCTCTCCACTGGGGACACAGCGTCTTAGGCATGGTCtacggggagaaagagagacgctGATGACCTGTgcgtgcgcgtgcatgtgtgtatgtcgCGTCTGTACCTTGCTCCTGTACTTCTGGTTTCCCAGTCTGAACTTCGCATAGGGGTCACTGAGGCCATTGGGGTCCATGGGACAAAGGTCACGACCTTCGATCAGAGAGATGCTGACGATGCCTCTCCACAGCTGGTGCTTACGGTGCAGCTCTGCCA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2460800 False 1199 lncRNA 0.49 3 11623592 11628058
TU2460801 True 1187 lncRNA 0.49 4 11623592 11628058

Neighbor

gene id symbol gene type direction distance location
LOC110509625 LOC106568355 coding downstream 98378 11456618 ~ 11525214 (-)
LOC118945324 jelt coding downstream 113650 11503158 ~ 11509942 (-)
LOC110509622 NA coding downstream 155535 11464844 ~ 11468057 (-)
LOC110509320 cryba4 coding downstream 171581 11448974 ~ 11452011 (-)
LOC110512753 LOC106568375 coding downstream 175573 11351194 ~ 11448019 (-)
LOC110509627 LOC106563113 coding upstream 15975 11644033 ~ 11655110 (-)
vcanb LOC106568264 coding upstream 225271 11853329 ~ 11884996 (-)
xrcc4 xrcc4 coding upstream 257633 11885691 ~ 11915884 (-)
atg10 atg10 coding upstream 312572 11940630 ~ 11945825 (-)
zcchc9 zcchc9 coding upstream 333905 11961963 ~ 11966304 (-)
G2151963 NA non-coding downstream 170368 11453023 ~ 11453224 (-)
G2151955 NA non-coding downstream 190684 11431821 ~ 11432908 (-)
G2151953 NA non-coding downstream 195183 11426175 ~ 11428409 (-)
G2151952 NA non-coding downstream 196079 11425887 ~ 11427513 (-)
G2151954 NA non-coding downstream 196198 11426534 ~ 11427394 (-)
G2152055 LOC107555460 non-coding upstream 463 11628521 ~ 11629395 (-)
G2152011 NA non-coding upstream 5015 11633073 ~ 11637738 (-)
G2152088 NA non-coding upstream 68268 11696326 ~ 11696563 (-)
G2152090 NA non-coding upstream 68898 11696956 ~ 11697288 (-)
G2152091 NA non-coding upstream 69403 11697461 ~ 11697908 (-)
LOC100135966 rps27a other downstream 379532 11241994 ~ 11244060 (-)
G2151771 NA other downstream 629713 10993166 ~ 10993879 (-)
ttll11 LOC106562979 other downstream 654291 10923070 ~ 10969315 (-)
G2151189 NA other downstream 824274 10718021 ~ 10799318 (-)
G2152107 NA other upstream 94014 11722072 ~ 11722479 (-)
G2153174 NA other upstream 1021118 12649176 ~ 12649495 (-)
G2153683 NA other upstream 1459395 13087453 ~ 13091356 (-)
G2154361 LOC106563107 other upstream 2100775 13728833 ~ 13731096 (-)

Expression


Co-expression Network