G2152081 (LOC106563079)


Basic Information

Item Value
gene id G2152081
gene name LOC106563079
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11718704 ~ 11719766 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2460831
TGAGTGTCTGCTCTacgcatttgtgtgtgtgctcactCTCTCCGTCTCCGTCTGTATCGAACTCGTCGATCATGCTGCGTAGTTCCTCATCTGTGATGTTCTCTCCTAGCTCTCTGGCCACACGTCTCAGGTTCCTCAGGCTGATCTTCCCGGAGTCGTCATCATCAAACAGCTTAAAGGCCTTCAGGATCTCCTCCTTTGGGTCCCTCTCCAGGATACGGTCTGTCACAACTTCATTAAAGTCATCAAATGTTATTTTGCCATTCCCCTCTCTGTCGTAATCTTTTAGTATCTTCAGTATATCTACTTTCTTCACCTCAAAACCCATA
>TU2460832
GTCGGTGAAGCCAGTTTGTATTTAAAACCGCCATCCAGAAATACTATTGAAGACGTTGAAGTTTACAAGGAATGTCTCAGAGACATGACCTGTTATGTAATCTGTACAGTTTTCTGTACGGTATGGATACACAGCGCAGCAAGTGCATCTATTCAAATTTTGAAAAGAAACTACTAAAAGAAAAGAACATACAATATTTGGTTGTATTTGCACCAGACACATTGTAAACACACACAAGATGTTCCAACAAAGAACAGAACAGGAGCGACAGCAGTGCTATTTGGGAGAGATTTTGAATCGCAGTACTCTACAGTGGCGTCCTTACCTACTCCTACTTCCCCTGGTCAGTTCTGGTCGGTCGGTGTAGATAAAGGGAGACAAGGTAAGCTATTTAGCAGTCCCTCAGTGACCTGGGGGACCTATCCATCCCACAGTGAATCTATAGCCTCAGCCTCCTAGCCAAGCCCCCAGAGCAGCAGCCCTTCAATCAGGAGTCTCCAGTCATTATGGATACAAAATCCTcctggttgatCTCTCCGTCTCCGTCTGTATCGAACTCGTCGATCATGCTGCGTAGTTCCTCATCTGTGATGTTCTCTCCTAGCTCTCTGGCCACACGTCTCAGGTTCCTCAGGCTGATCTTCCCGGAGTCGTCATCATCAAACAGCTTAAAGGCCTTCAGGATCTCCTCCTTTGGGTCCCTCTCCAGGATACGGTCTGTCACTGAGACACACGCACATGGGTAAACAGACACATGGTTACACGCACACACGCGTGAAGAGCAGccataacacatactgtacagggTTCCACATACGCAAACAAAGCAGGAAACATACCAACTTCATTAAAGTCATCAAATGTTATTTTGCCATTCCCCTCTCTGTCGTAATCTTTTAGTATCTTCAGTATATCTACTTTCTTCACCTCAAAACCCATA

Function

NR:

description
centrin-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2460831 False 329 lncRNA 0.47 2 11718704 11719148
TU2460832 True 940 lncRNA 0.45 2 11718704 11719766

Neighbor

gene id symbol gene type direction distance location
LOC110509627 LOC106563113 coding downstream 63594 11644033 ~ 11655110 (-)
LOC110509625 LOC106568355 coding downstream 193490 11456618 ~ 11525214 (-)
LOC118945324 jelt coding downstream 208762 11503158 ~ 11509942 (-)
LOC110509622 NA coding downstream 250647 11464844 ~ 11468057 (-)
LOC110509320 cryba4 coding downstream 266693 11448974 ~ 11452011 (-)
vcanb LOC106568264 coding upstream 133563 11853329 ~ 11884996 (-)
xrcc4 xrcc4 coding upstream 165925 11885691 ~ 11915884 (-)
atg10 atg10 coding upstream 220864 11940630 ~ 11945825 (-)
zcchc9 zcchc9 coding upstream 242197 11961963 ~ 11966304 (-)
LOC110509644 lage3 coding upstream 407043 12126809 ~ 12127782 (-)
G2152099 NA non-coding downstream 13914 11704587 ~ 11704790 (-)
G2152095 NA non-coding downstream 17936 11700454 ~ 11700768 (-)
G2152092 NA non-coding downstream 20536 11697937 ~ 11698168 (-)
G2152091 NA non-coding downstream 20796 11697461 ~ 11697908 (-)
G2152090 NA non-coding downstream 21416 11696956 ~ 11697288 (-)
G2152105 NA non-coding upstream 1500 11721266 ~ 11721468 (-)
G2152106 NA non-coding upstream 1732 11721498 ~ 11721702 (-)
G2152108 NA non-coding upstream 3753 11723519 ~ 11723858 (-)
G2152111 NA non-coding upstream 6698 11726464 ~ 11726671 (-)
G2152120 NA non-coding upstream 11312 11731078 ~ 11731313 (-)
LOC100135966 rps27a other downstream 474644 11241994 ~ 11244060 (-)
G2151771 NA other downstream 724825 10993166 ~ 10993879 (-)
ttll11 LOC106562979 other downstream 749403 10923070 ~ 10969315 (-)
G2151189 NA other downstream 919386 10718021 ~ 10799318 (-)
G2152107 NA other upstream 2306 11722072 ~ 11722479 (-)
G2153174 NA other upstream 929410 12649176 ~ 12649495 (-)
G2153683 NA other upstream 1367687 13087453 ~ 13091356 (-)
G2154361 LOC106563107 other upstream 2009067 13728833 ~ 13731096 (-)

Expression


Co-expression Network