Gene
RNA
| Item | Value |
|---|---|
| gene id | G2152108 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048593.1 |
| NCBI id | CM023247.2 |
| chromosome length | 47748341 |
| location | 11723519 ~ 11723858 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: hephaestin-like protein 1, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2460860 | True | 340 | lncRNA | 0.46 | 1 | 11723519 | 11723858 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110509627 | LOC106563113 | coding | downstream | 68409 | 11644033 ~ 11655110 (-) |
| LOC110509625 | LOC106568355 | coding | downstream | 198305 | 11456618 ~ 11525214 (-) |
| LOC118945324 | jelt | coding | downstream | 213577 | 11503158 ~ 11509942 (-) |
| LOC110509622 | NA | coding | downstream | 255462 | 11464844 ~ 11468057 (-) |
| LOC110509320 | cryba4 | coding | downstream | 271508 | 11448974 ~ 11452011 (-) |
| vcanb | LOC106568264 | coding | upstream | 129471 | 11853329 ~ 11884996 (-) |
| xrcc4 | xrcc4 | coding | upstream | 161833 | 11885691 ~ 11915884 (-) |
| atg10 | atg10 | coding | upstream | 216772 | 11940630 ~ 11945825 (-) |
| zcchc9 | zcchc9 | coding | upstream | 238105 | 11961963 ~ 11966304 (-) |
| LOC110509644 | lage3 | coding | upstream | 402951 | 12126809 ~ 12127782 (-) |
| G2152106 | NA | non-coding | downstream | 1817 | 11721498 ~ 11721702 (-) |
| G2152105 | NA | non-coding | downstream | 2051 | 11721266 ~ 11721468 (-) |
| G2152081 | LOC106563079 | non-coding | downstream | 3753 | 11718704 ~ 11719766 (-) |
| G2152099 | NA | non-coding | downstream | 18729 | 11704587 ~ 11704790 (-) |
| G2152095 | NA | non-coding | downstream | 22751 | 11700454 ~ 11700768 (-) |
| G2152111 | NA | non-coding | upstream | 2606 | 11726464 ~ 11726671 (-) |
| G2152120 | NA | non-coding | upstream | 7220 | 11731078 ~ 11731313 (-) |
| G2152122 | NA | non-coding | upstream | 10914 | 11734772 ~ 11735002 (-) |
| G2152321 | NA | non-coding | upstream | 65652 | 11789510 ~ 11790126 (-) |
| G2152298 | NA | non-coding | upstream | 71363 | 11795221 ~ 11796536 (-) |
| G2152107 | NA | other | downstream | 1040 | 11722072 ~ 11722479 (-) |
| LOC100135966 | rps27a | other | downstream | 479459 | 11241994 ~ 11244060 (-) |
| G2151771 | NA | other | downstream | 729640 | 10993166 ~ 10993879 (-) |
| ttll11 | LOC106562979 | other | downstream | 754218 | 10923070 ~ 10969315 (-) |
| G2153174 | NA | other | upstream | 925318 | 12649176 ~ 12649495 (-) |
| G2153683 | NA | other | upstream | 1363595 | 13087453 ~ 13091356 (-) |
| G2154361 | LOC106563107 | other | upstream | 2004975 | 13728833 ~ 13731096 (-) |
| G2154418 | LOC106563033 | other | upstream | 2056801 | 13780659 ~ 13782254 (-) |
