G2152850


Basic Information

Item Value
gene id G2152850
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 12214977 ~ 12216997 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2461673
GTGCACAGGAAAAGTAATagcctttttttgtttttatttcacaTGAATTTATTGATATACAGTACGTTTTACTAACTTCATAAGTACTGTTCAAGTAACAAGCACTTAACAATAAACACATGCATTCACTCATCATTCCTTCACTGTAGAGATGAGTTTAAACAGGAAACATACAGTCTGTGCACTTGGATTGATTAAAACATATCAATATTGTGGGGTAAATACAGTGTCGTTCTCTCTCTGCCAATAGTAAACCTTCTCcaacacttgagtaaaagtctcaCTCATCTTTAGAGTTCTCCGTCTCTGACTCTCCCAGGTCGTCCAGCCTACCTGACACAACACCCCTAACAAGCCTATCCATCCTAAAAGTGTGCAGGGCAAGGTCACTAATCTACCTTGGTTTGGAATTGTGTTATAAATTTCATCAAGACCTTTACAGAcgtccctccccctccttctctagACCCAGTAGACAGGACCAGACGCTGACCGGTATTCCCCATGTTCACCATGACACACACCACAGTTCAGTGGACAGCAGATCTGATCTGGTTCTACACATGGACTGTGATGGTGAATCCTATCAGATTGTGAAGAAGCCAACTTGATGAGTTTCTCCTGACCCAGCCCAACATAATTCACTAAGTGGAGGTCCCTACATGCTCTTTCTTCTCTTCAGTggaggtttggggtcacttctcCCACTGCAACATACCACAGGACACTGGTCAACATATTGACTCATCAGAGACCCATTTAAGACGGTTGTTAAATAATGTTGGATCTTATTTGGTGTCAACATTAGACATCATCTAAGAATTTTTCCTCAACAGAGAATAAACATTATCTTTCAGATTATGTGCATttgatttcatatttttgataaaTGTAGTTTCTTTTCAGGACATCTCCCTGTTTGTCAATGTGCCGGAAGTTAAAAAACAATTGCAATAAATATGCCCTTGTCGGGATACATAAGGTGAACATATCTAGCATTGCAACAAGGGAAATAGCCTGTGTGGATAACGACCATTAGATACAGTCAAAATGCGCTAGCAAGCTAAACATCCATGCCATCTCTATGGGAATGCTAACTGCAATAACGTTGGCATCGTCGTGCTTGCACTAGCTACAGgaaaacatacatttaaaaaaatgcaatATTTGTCCTCAACAATAACAtatagtagttacagtatattaagcCAACACCTAGTGACCTCGTCAAGAGATTTGGACCTCTTGGCATAACGGGTAAGGTGTTGGCTTCACAGTCACTAGATCTGGGCTTGAGTCCCGGTCGGGGCTACCTCCCGAATTCACTATATGCTTCAAGTTCTGTGCACTTTAGTACAAAGTCTTGACAAATGTAATTCACATTTACTGATGGTTTTGCTTGTCTGTCAATGAGCCGGCAGTTGAAAGACAAACGCACGATAATGCAACCTACTCCGAGAGCGTTTGGGGAGCATATTGTTAAATGTAAGCAAGCGGATATACTTTGAGCCTTGAAAACACACTGCTGTTCACAACACCTCTACTTCTTTATAGTATTAGTGTCATTGGTACAAAACAGACATAAGTATTTACCCACCCAATATCCCTCCTGATCATCCATTATCTACCACGGAGAGTCATGAATAATGATAATTATCATTTAAAACAAAATAGTTATCACTCACTACCTTCAAATCACTATCTGGCACGTCATTCAATTAAATGCCAGTGAGATGTAATATGCATCAGAGGGGCATGAGCGTTCATCACATGTATTACTAATGAGAATCAAATGCTTCGGGACATCAAGCCAAGCGTGATTGTAATATGCATTATAACTAGTTCATATTCAGAATTAATATTGTCTATTAATCCTAACTACTGTGCATGAGAAGGTAGAAGTGTGCTGTACAAGGAAACAGACGTTATCGTTTAGATGTTCATAAGCATGTACTGTAGTGTACCGCACTTCCAAAGCACTTATCTCTAACCGATAAACCCACTGCAACCTCCTTCTGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2461673 True 2021 lncRNA 0.40 1 12214977 12216997

Neighbor

gene id symbol gene type direction distance location
march5l LOC106563060 coding downstream 13934 12195098 ~ 12201043 (-)
fgfr1b LOC106563063 coding downstream 36133 12150366 ~ 12178844 (-)
LOC110509644 lage3 coding downstream 87195 12126809 ~ 12127782 (-)
zcchc9 zcchc9 coding downstream 248673 11961963 ~ 11966304 (-)
atg10 atg10 coding downstream 269152 11940630 ~ 11945825 (-)
npy8ar LOC106563058 coding upstream 20706 12237703 ~ 12263143 (-)
zgc:86599 LOC106567989 coding upstream 96144 12313141 ~ 12320957 (-)
LOC110509322 LOC106568012 coding upstream 136678 12353675 ~ 12363879 (-)
gfra2b LOC106563053 coding upstream 340135 12557132 ~ 12627138 (-)
LOC110509362 NA coding upstream 509133 12726130 ~ 12726962 (-)
G2152880 NA non-coding downstream 21423 12193249 ~ 12193554 (-)
G2152858 NA non-coding downstream 68808 12145584 ~ 12146169 (-)
G2152855 LOC106563065 non-coding downstream 74559 12139654 ~ 12140418 (-)
G2152843 wdr45 non-coding downstream 98480 12113197 ~ 12116497 (-)
G2152891 NA non-coding upstream 1890 12218887 ~ 12219105 (-)
G2152892 NA non-coding upstream 2197 12219194 ~ 12219474 (-)
G2152893 NA non-coding upstream 2550 12219547 ~ 12220652 (-)
G2152896 NA non-coding upstream 8951 12225948 ~ 12226157 (-)
G2152900 NA non-coding upstream 13380 12230377 ~ 12232135 (-)
G2152107 NA other downstream 492498 11722072 ~ 11722479 (-)
LOC110509625 LOC106568355 other downstream 689825 11456618 ~ 11525214 (-)
LOC100135966 rps27a other downstream 970917 11241994 ~ 11244060 (-)
G2151771 NA other downstream 1221098 10993166 ~ 10993879 (-)
G2153174 NA other upstream 432179 12649176 ~ 12649495 (-)
G2153683 NA other upstream 870456 13087453 ~ 13091356 (-)
G2154361 LOC106563107 other upstream 1511836 13728833 ~ 13731096 (-)
G2154418 LOC106563033 other upstream 1563662 13780659 ~ 13782254 (-)
G2154637 NA other upstream 1783528 14000525 ~ 14010167 (-)

Expression


Co-expression Network