G2152621


Basic Information

Item Value
gene id G2152621
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 12275440 ~ 12275681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2461421
gacttacacagtaattatgacaacttcggaggatgtcctccaacctatcagagttcTAGCAGctatccacccaatcaaaggattagCGAATGagtctagtactgaaagcataagctacagctagctagcactgcagtgcataaaatgtagtgagtagttgactcaaagagagagaaagacaatagtttaacagttttgaacaaattaatttattccaaAATTGAGAGAGAGCTATTTggttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2461421 True 242 lncRNA 0.38 1 12275440 12275681

Neighbor

gene id symbol gene type direction distance location
actr1 LOC106563059 coding upstream 60722 12206283 ~ 12214718 (+)
stc1l LOC106563064 coding upstream 131169 12142150 ~ 12144271 (+)
LOC110509641 LOC106563065 coding upstream 133382 12128086 ~ 12142058 (+)
zgc:100918 LOC105015198 coding upstream 149214 12116644 ~ 12126226 (+)
wdr45 wdr45 coding upstream 158960 12113136 ~ 12116480 (+)
tcf7l1a LOC106563056 coding downstream 53071 12328752 ~ 12353472 (+)
dusp11 dusp11 coding downstream 89861 12365542 ~ 12372347 (+)
atp6v1b2 LOC106563054 coding downstream 101383 12377064 ~ 12394568 (+)
LOC110509656 NA coding downstream 162901 12438582 ~ 12445321 (+)
LOC110509661 LOC106563047 coding downstream 742372 13018053 ~ 13088171 (+)
G2152608 NA non-coding upstream 18562 12256622 ~ 12256878 (+)
G2152603 LOC106563058 non-coding upstream 32712 12242189 ~ 12242728 (+)
G2152602 LOC106563058 non-coding upstream 33463 12241506 ~ 12241977 (+)
G2152590 NA non-coding upstream 39642 12230415 ~ 12235798 (+)
G2152599 NA non-coding upstream 49307 12225580 ~ 12226133 (+)
G2152642 NA non-coding downstream 31868 12307549 ~ 12307749 (+)
G2152645 NA non-coding downstream 36225 12311906 ~ 12312161 (+)
G2152646 LOC106567989 non-coding downstream 37462 12313143 ~ 12343582 (+)
G2152715 NA non-coding downstream 201310 12476991 ~ 12477389 (+)
G2152741 NA non-coding downstream 277901 12553582 ~ 12558205 (+)
G2152150 NA other upstream 509089 11764224 ~ 11766351 (+)
G2151555 NA other upstream 908948 11359557 ~ 11432252 (+)
G2150729 NA other upstream 1813220 10461753 ~ 10462220 (+)
LOC110509604 LOC106562973 other upstream 1966361 10064167 ~ 10309768 (+)
G2149183 NA other upstream 2900928 9374000 ~ 9374512 (+)
G2152639 NA other downstream 25111 12300792 ~ 12307438 (+)
G2153316 NA other downstream 484199 12759880 ~ 12760490 (+)
G2154294 NA other downstream 1392608 13668289 ~ 13669170 (+)
G2154391 NA other downstream 1497027 13772708 ~ 13776134 (+)
G2154438 NA other downstream 1530332 13806013 ~ 13813970 (+)

Expression


Co-expression Network