G2152645


Basic Information

Item Value
gene id G2152645
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 12311906 ~ 12312161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2461446
atatCGGCCAGTCCCTGAAGGAGTCAGTACGGTTCACTAATTCATATTAAACTGCTTATGGCAGTAGGCAGAGCatggcattagtcatgtaaacaccttactttGCTCATCTTAAAATCGGCACATGGGTCATAATCAAAGTAAGCATAAGTACGCTGATTAAAACTTGGTTTTCAGGGCAATTTTGAATGATTACATGTAAACACCTTAAAATCACCGTTTCAGCAGTGTATTCTGTCTGTGCATGTAATAGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2461446 True 256 lncRNA 0.39 1 12311906 12312161

Neighbor

gene id symbol gene type direction distance location
actr1 LOC106563059 coding upstream 97188 12206283 ~ 12214718 (+)
stc1l LOC106563064 coding upstream 167635 12142150 ~ 12144271 (+)
LOC110509641 LOC106563065 coding upstream 169848 12128086 ~ 12142058 (+)
zgc:100918 LOC105015198 coding upstream 185680 12116644 ~ 12126226 (+)
wdr45 wdr45 coding upstream 195426 12113136 ~ 12116480 (+)
tcf7l1a LOC106563056 coding downstream 16591 12328752 ~ 12353472 (+)
dusp11 dusp11 coding downstream 53381 12365542 ~ 12372347 (+)
atp6v1b2 LOC106563054 coding downstream 64903 12377064 ~ 12394568 (+)
LOC110509656 NA coding downstream 126421 12438582 ~ 12445321 (+)
LOC110509661 LOC106563047 coding downstream 705892 13018053 ~ 13088171 (+)
G2152642 NA non-coding upstream 4157 12307549 ~ 12307749 (+)
G2152621 NA non-coding upstream 36225 12275440 ~ 12275681 (+)
G2152608 NA non-coding upstream 55028 12256622 ~ 12256878 (+)
G2152603 LOC106563058 non-coding upstream 69178 12242189 ~ 12242728 (+)
G2152602 LOC106563058 non-coding upstream 69929 12241506 ~ 12241977 (+)
G2152646 LOC106567989 non-coding downstream 982 12313143 ~ 12343582 (+)
G2152715 NA non-coding downstream 164830 12476991 ~ 12477389 (+)
G2152741 NA non-coding downstream 241421 12553582 ~ 12558205 (+)
G2153147 NA non-coding downstream 317375 12629536 ~ 12629832 (+)
G2153148 NA non-coding downstream 318038 12630199 ~ 12630421 (+)
G2152639 NA other upstream 4468 12300792 ~ 12307438 (+)
G2152150 NA other upstream 545555 11764224 ~ 11766351 (+)
G2151555 NA other upstream 945414 11359557 ~ 11432252 (+)
G2150729 NA other upstream 1849686 10461753 ~ 10462220 (+)
LOC110509604 LOC106562973 other upstream 2002827 10064167 ~ 10309768 (+)
G2153316 NA other downstream 447719 12759880 ~ 12760490 (+)
G2154294 NA other downstream 1356128 13668289 ~ 13669170 (+)
G2154391 NA other downstream 1460547 13772708 ~ 13776134 (+)
G2154438 NA other downstream 1493852 13806013 ~ 13813970 (+)
G2154512 NA other downstream 1621087 13915670 ~ 13935819 (+)

Expression


Co-expression Network