G2152646 (LOC106567989)


Basic Information

Item Value
gene id G2152646
gene name LOC106567989
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 12313143 ~ 12343582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2461448
AGGAGTTAAAGAGTTTATTGGTTTGATAAGAGGGGTAAACTGGACCAAGTAACATTGTACAGTACATACGTCAACGTAAACTGCTGTTTGAATATAATTGCTTGAACAATAACATTGTGTCCCACACCGTAAAGCCTAGGCTTTTGGTACATTTAAAACAATAACTGGCACTGTAAGCACAGACCGACATTGAGGTTAGATCATCAAGTAGACTCTAGGATGAGATAAAGAATTGGACAGCAAAGAAATCATAAAAAGGAATCCAGAAAGTGCACAGAGCACAATGTTCTAATTTAGAAACCCCTACACCTAATGTGCAAATACACTTCCTGAAAGGGCATTGTGATTTCTGACATCACTGTCTAACCCCACTTCACCCCATTCTAAAGAAGCTGGAATCTTTCAGAGTGAATGTAAGGGAATAGGTGTGTTTTTTTttggtgatatatatatatatatatatataaa
>TU2461449
AGGAGTTAAAGAGTTTATTGGTTTGATAAGAGGGGTAAACTGGACCAAGTAACATTGTACAGTACATACGTCAACGTAAACTGCTGTTTGAATATAATTGCTTGAACAATAACATTGTGTCCCACACCGTAAAGCCTAGGCTTTTGGTACATTTAAAACAATAACTGGCACTGTAAGCACAGACCGACATTGAGGTTAGATCATCAAGTAGACTCTAGGATGAGATAAAGAATTGGACAGCAAAGAAATCATAAAAAGGAATCCAGAAAGTGCACAGAGCACAATGTTCTAATTTAGAAACCCCTACACCTAATGTGCAAATACACTTCCTGAAAGGGCATTGTGATTTCTGACATCACTGTCTAACCCCACTTCACCCCATTCTAAAGAAGCTGGAATCTTTCAGAGTGAATGTAAGGGAATAGGTGTGTTTTTTTttggtggtgtgtatgtatgtatgtatatatataatagaTAGAGGGTGTATATATTTTAGTGTGGCAGCTCGTGGGGCACCAGTTTGTAGTGGGAGCCACAGGAGGGACAGCGCTGAGCCTCGCCCTGATGGAGCCAGAACCACACCACTGCTGTGTTATCCTCCTCACAGACACAGCCCACAATCCTCTTTGTGGTGACGGAGGGCACCAGATGAGGGTCAGCCTTGGAGCCAGCATACTCCTTGGGTTTCAGCATGCTGTAGGGGTCCGCGCCCTGTTGGGCAGCCTTCATAACGATCTTCTCCAGACCAGTGGCCTGCTCCTCGTCGGTGGGGATGCCTCCAGCAGCCATGCCGCGGGTGAGAATAGGGACCGGTGCGGCCCGGCAAGTTGTAGCGGCCCTGATGGACGATCGGAGCAGTAACCTTGCAGCCATTTCGActtctggttgaaaatacaactgGCAGCACGCTGATGACGTTTAATATTTTTACCTACTTCTTCTTCTCCTTTGGAAGTTAATTGGCGGATCGCATCCAACTTTTAGGTGCACACACCGCCACCTACTGCACTAGTGCGTGATGCCATTCACGTCCTACCTACATTATATTCTTAGATACAATAAATCAAAATTGGGGAAAAGGAAAATTACCCTACCATCTATTAGTCCTCTATAAAAAAACAccacccattccactatttaacacTATCTAGTCCTACTCCAGACCAATGGTCTGAAGGGACATATCAATACCCCTCAACACCCCCTGCAGCTGTTCTGCAGTAAATCTTCGCAATCTCAAGCACTTCTCTGCCGCTGCCACTACAACCTCTATTTTCGGTGACTTTCAATTAATTTCTGCTGTACAATTAACCACCATGGCTATAAATGCTAAAAAGCCCATGTTACTGAAGCACATATT
>TU2461450
AGGAGTTAAAGAGTTTATTGGTTTGATAAGAGGGGTAAACTGGACCAAGTAACATTGTACAGTACATACGTCAACGTAAACTGCTGTTTGAATATAATTGCTTGAACAATAACATTGTGTCCCACACCGTAAAGCCTAGGCTTTTGGTACATTTAAAACAATAACTGGCACTGTAAGCACAGACCGACATTGAGGTTAGATCATCAAGTAGACTCTAGGATGAGATAAAGAATTGGACAGCAAAGAAATCATAAAAAGGAATCCAGAAAGTGCACAGAGCACAATGTTCTAATTTAGAAACCCCTACACCTAATGTGCAAATACACTTCCTGAAAGGGCATTGTGATTTCTGACATCACTGTCTAACCCCACTTCACCCCATTCTAAAGAAGCTGGAATCTTTCAGAGTGAATGTAAGGGAATAGGTGTGTTTTTTTttggtggtgtgtatgtatgtatatatatatatatatatatatataaa
>TU2461451
AGGAGTTAAAGAGTTTATTGGTTTGATAAGAGGGGTAAACTGGACCAAGTAACATTGTACAGTACATACGTCAACGTAAACTGCTGTTTGAATATAATTGCTTGAACAATAACATTGTGTCCCACACCGTAAAGCCTAGGCTTTTGGTACATTTAAAACAATAACTGGCACTGTAAGCACAGACCGACATTGAGGTTAGATCATCAAGTAGACTCTAGGATGAGATAAAGAATTGGACAGCAAAGAAATCATAAAAAGGAATCCAGAAAGTGCACAGAGCACAATGTTCTAATTTAGAAACCCCTACACCTAATGTGCAAATACACTTCCTGAAAGGGCATTGTGATTTCTGACATCACTGTCTAACCCCACTTCACCCCATTCTAAAGAAGCTGGAATCTTTCAGAGTGAATGTAAGGGAATAGGTGTGTTTTTTTttggtggtgtgtatgtatgtatatatatatatatatatatataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2461448 False 468 lncRNA 0.36 2 12313143 12343582
TU2461449 False 1360 lncRNA 0.45 4 12313143 12321386
TU2461450 False 484 lncRNA 0.36 2 12313143 12343582
TU2461451 True 482 lncRNA 0.36 2 12313143 12343582

Neighbor

gene id symbol gene type direction distance location
actr1 LOC106563059 coding upstream 98425 12206283 ~ 12214718 (+)
stc1l LOC106563064 coding upstream 168872 12142150 ~ 12144271 (+)
LOC110509641 LOC106563065 coding upstream 171085 12128086 ~ 12142058 (+)
zgc:100918 LOC105015198 coding upstream 186917 12116644 ~ 12126226 (+)
wdr45 wdr45 coding upstream 196663 12113136 ~ 12116480 (+)
dusp11 dusp11 coding downstream 21960 12365542 ~ 12372347 (+)
atp6v1b2 LOC106563054 coding downstream 33482 12377064 ~ 12394568 (+)
LOC110509656 NA coding downstream 95000 12438582 ~ 12445321 (+)
LOC110509661 LOC106563047 coding downstream 674471 13018053 ~ 13088171 (+)
LOC110509665 NA coding downstream 882825 13226407 ~ 13230321 (+)
G2152645 NA non-coding upstream 982 12311906 ~ 12312161 (+)
G2152642 NA non-coding upstream 5394 12307549 ~ 12307749 (+)
G2152621 NA non-coding upstream 37462 12275440 ~ 12275681 (+)
G2152608 NA non-coding upstream 56265 12256622 ~ 12256878 (+)
G2152603 LOC106563058 non-coding upstream 70415 12242189 ~ 12242728 (+)
G2152715 NA non-coding downstream 133409 12476991 ~ 12477389 (+)
G2152741 NA non-coding downstream 210000 12553582 ~ 12558205 (+)
G2153147 NA non-coding downstream 285954 12629536 ~ 12629832 (+)
G2153148 NA non-coding downstream 286617 12630199 ~ 12630421 (+)
G2153150 NA non-coding downstream 287449 12631031 ~ 12631382 (+)
G2152639 NA other upstream 5705 12300792 ~ 12307438 (+)
G2152150 NA other upstream 546792 11764224 ~ 11766351 (+)
G2151555 NA other upstream 946651 11359557 ~ 11432252 (+)
G2150729 NA other upstream 1850923 10461753 ~ 10462220 (+)
LOC110509604 LOC106562973 other upstream 2004064 10064167 ~ 10309768 (+)
G2153316 NA other downstream 416298 12759880 ~ 12760490 (+)
G2154294 NA other downstream 1324707 13668289 ~ 13669170 (+)
G2154391 NA other downstream 1429126 13772708 ~ 13776134 (+)
G2154438 NA other downstream 1462431 13806013 ~ 13813970 (+)
G2154512 NA other downstream 1589666 13915670 ~ 13935819 (+)

Expression


Co-expression Network