G2152996 (LOC106563054)


Basic Information

Item Value
gene id G2152996
gene name LOC106563054
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 12392925 ~ 12395321 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2461822
CGTGTATTCCTTTATTGCACAGACACACCCCAGAAAGCTGAGCAGTCATGCCTGCATTTTGACCAAAACGACACTAACCATAAATCCCGAAACAGAACATTTACCAAAAGATATAGGAGGAACACATACATAAGTACAGTACATCTGTCTACTCTAGAAGTCTTCACCGTAAATAACAACATTGTCATCACTAAACCACAGCGTGCGTGTCGACGGAGCAGCTacaatagagaaatagagagagaaatatatagacGACACATATACACTGAgcgaacaaaacattaggaacacctgcttctttccatgacacagactgaccaggtgaatccgggtgaaagctatgatcccttattgatgacacttgttaaattcactttaATCATTGTTGATTTAGGGGAAGATTCAGGTTAAAAAATGatgatttttaagtcttgagacaattgacatccagagggtgaatgggcaagacacaagatttaagtgcctttgaacggggtatggtagtaagtgccaggagcaccggtctGAGTGTttaaagaactgcaacgctgctgggtttttcatgctcaacagtttcccgtgtgtatcaagaatggtccaccacccaaaggacatccggacaacttgacacaactgtggaaagcattggagtcaacatgggccggcgtccctgtggaacgctttcgacaccttgtcgtCCACGCCCtgacgaactgaggctgttcggacggcaaaaggggttgcaactcaatattaggaagacgTTCCTAATGTTTGTGCACTCAGTGAACAGGTAATAATAACAACCGGCAGTTTGTGTGTTGTATCTCTGGCTTTAGTTCAATGAATTAAGGGGGCTTTTGGGTTAATTCGGCGCAGAAACGGCACTGATCTATGCAAAAGATACTAGGAGCAACGCACAGGCAACTTATATGGTCATAACAAAAGGCCATTAGAAACGTAAACAATGACTTGTGAGTGAAATAGGCTGTTAGCCTTGAGCCCATCTTTCATACACATGCATCATCACTGCATATTCACTAGTCTACACCTACAGTACGCCTAAAGTACACCTACACATCCTGTTAAAAATACCTTATACCATCCCTCTGACTTATAACAGACCATTCACTATTCCTCCAGCTCCTTTccgtccatctatccatccaatACATCTAACAGCCAAGGCCAGGAGATTTTCCTGATCATGTGATCTGACCAGGGAAAATCCCAGACCCTATTACCAGGCTATTTGGCTCTGCTGGTCAGAGAGAACCTCTCTGGCTTGGAAACCACTGTCTCCATCATCTGCATCTTCTACTTCTACGGGTCTATCTGTTCGGGTAAGGGGTTACCTCTGTGTGTGACAGTATCAGTACTAGCCTATGATAATGCGTACAGTACAGAAGCTACTGGCAATGTTACAACAGCAACACCATTTACAAAGAGGCCGAGCAAGAGGGAAGGGTTGGAGTTGTGTGTGTCACTATGCATTCCTATGTTTGTCATCATTACTTCAAGCGGGGGTAGAACTCTGCCAGCGTGCTCTGAGGGATTCTCTTCAGCATCTCTTTGGGGAAGATTCTCATCAGCTGCCAGCCGATATCCAGTGTCTCAAACACAGTCCTGTTCTCATAGGctcctggGCGATGAAGTTCTTCTCAAACTTCTGTAGGAACTCCAGGTAGAGAAGATCATCAGGCGTCAGAGCCTCCTCTCCTACCACAGCCTTCATCGCCTGCACGTCCTTACCTATAGCATAACAcgcatacaGCTGGTTGGAGACATCAGAGTGGTCTTTGCGTGTCATCCCCTCTCCGATGGCTGACTTCATCAGACGAGACAGTGATGGCAGAACATTGATGGGAGGATagatctgtgtgtgtctctgtggtgtCACCTGTCTGTTGTGCAGTTGTCTGTCCACATAGATCTGTCCCTCAGTGATGTACCCTGTCAGATCAGGGATGGGGTGAGTGatgtctgagtgagagagagagagagagagagagagagagagagagaga

Function

NR:

description
V-type proton ATPase subunit B, brain isoform-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2461822 True 2030 lncRNA 0.46 4 12392925 12395321

Neighbor

gene id symbol gene type direction distance location
LOC110509322 LOC106568012 coding downstream 29046 12353675 ~ 12363879 (-)
zgc:86599 LOC106567989 coding downstream 71968 12313141 ~ 12320957 (-)
npy8ar LOC106563058 coding downstream 129782 12237703 ~ 12263143 (-)
march5l LOC106563060 coding downstream 191882 12195098 ~ 12201043 (-)
fgfr1b LOC106563063 coding downstream 214081 12150366 ~ 12178844 (-)
gfra2b LOC106563053 coding upstream 161811 12557132 ~ 12627138 (-)
LOC110509362 NA coding upstream 330809 12726130 ~ 12726962 (-)
LOC110509658 LOC106563051 coding upstream 386523 12781844 ~ 12786031 (-)
LOC110509659 LOC106563050 coding upstream 586809 12982130 ~ 13001842 (-)
trnag-ccc-7 NA coding upstream 606668 13001989 ~ 13002059 (-)
G2152994 LOC101072524 non-coding downstream 102 12392074 ~ 12392823 (-)
G2152913 NA non-coding downstream 80014 12312717 ~ 12312911 (-)
G2152941 NA non-coding downstream 83836 12308859 ~ 12309089 (-)
G2152937 NA non-coding downstream 88336 12297891 ~ 12304589 (-)
G2152936 NA non-coding downstream 98051 12294657 ~ 12294874 (-)
G2153033 NA non-coding upstream 62132 12457453 ~ 12458594 (-)
G2153151 NA non-coding upstream 235502 12630823 ~ 12631056 (-)
G2153157 NA non-coding upstream 240725 12636046 ~ 12636370 (-)
G2153162 NA non-coding upstream 243052 12638373 ~ 12638670 (-)
G2153165 NA non-coding upstream 245467 12640788 ~ 12641022 (-)
atg10 atg10 other downstream 448772 11940630 ~ 11945825 (-)
G2152107 NA other downstream 670446 11722072 ~ 11722479 (-)
LOC110509625 LOC106568355 other downstream 867773 11456618 ~ 11525214 (-)
LOC100135966 rps27a other downstream 1148865 11241994 ~ 11244060 (-)
G2151771 NA other downstream 1399046 10993166 ~ 10993879 (-)
G2153174 NA other upstream 253855 12649176 ~ 12649495 (-)
G2153683 NA other upstream 692132 13087453 ~ 13091356 (-)
G2154361 LOC106563107 other upstream 1333512 13728833 ~ 13731096 (-)
G2154418 LOC106563033 other upstream 1385338 13780659 ~ 13782254 (-)
G2154637 NA other upstream 1605204 14000525 ~ 14010167 (-)

Expression


Co-expression Network