G2153672


Basic Information

Item Value
gene id G2153672
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13018084 ~ 13019533 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2462530
CCCATTTTGCTTGGTTGTTAAATCGAAGGGAAGGGATTCAGTCCGTGGGCGCAGAGCTCCAAAAGGCGGAGTGAACAATCTAGgtaatgtgtttttttccctctCCAATAAGCAGCTCTTCACAGCGCTGTTGACGTCTGTGGCTTGACAGGAGATTCGAGACAGTCAGTGTGGTTCCCTTCACGCCGACATGTCTTGCTAGTCTGTTCTACGCTATGGGGTGTTGGTTCAAAGTTCACCCAAGCAAACGTGTCGGTGGATTCATGACGACCGAAAACATCGATGTTGACGTTAGCGAAATTAAACGCACTCTTCAATCATGCTCAATGGGAAGCTAAAGCACGGAGGATATAGCAGCTAAGCTAACGTTGGCCACCGAGGCGCGCATACGTGACTGACGGTTCTTAATTCCAAAGTAGCGCGAGCTCCTTTTACACTTAAAAAGGCAGGGAAAATAGGGACCGCTTGCATTGATATTGGCAGCACACCATCTTCTCGTCTGCGGAAAAAAATGCTTAAAACATCCACTTGGTTCTAGACGGATTTGGGTATTACTATTACAGCTCCGCACGGCGCTCCTCTCCGTTGACTTGCATTTCGCTACTCTCCAAAGAAGACACCGCTCTCAAAATGTGACCAGCTGCGTGCACCGCAGTTATCCTCGGGCGAGAAAAATGCTTAACATTCATTCTTGCTTCTCACTTTGAAAGGCCCGACTGTTCAACGTTCCGAAATGTAACGTTACTCGTTGCTCAATCCCTGGCGTCGTAAGTGCCATCAAAATTCCTCTAGCAGCTATCCTACTACAGTTTATCAAAACGCATACATCTGCAGCAATAATAAACTCATTTTAGCTACAGGGGAAAATATCAAATTTTTATTTCGAATAGGTTTCATCTCCCATCTGTTTTCGCGGAAATACTTGGTACATTCTCATGGCTCCATCGTCTCCTCTAGTCAGACCAAACCAGCTACCGGCATCTTCAACGCCTGGTCAAATAAGGCCGACTATGAAATGCTATGCTGAATTAAGTTCAAATAAGAAAAATAGCCAATTCGTTGATTTTATTCATCAGATAGGGATTTTAAATGTCAAATCACGGCCAGTCTTTGCTCCATCGAACGCCTCCCTTTTTCTCAAGCCgtctgtctgtgtagtgtctGATCTCTCCAATCATCCCATTCATCACCTCTC
>TU2462532
ctatgaacttcataTGTTGGGTCCTTTTACATGTAAATTACCTAAAGCTCAGGCCATGGGCTGATGGTGAGGCTATCAACACAAGGCAACCCAACTTCAGGTAAATCATGTCGCCAAACAGCGTATTGTTTCTGTCAACCTTCTACCCCCACTTATCTATCTCGAAACAAACCAGGCTTCCTAGAAATCATAACACACCCATGAATACAATTATTGTAGCACAGACTAAATGGCACTACATTGCGCGATACGTACCCCATTTTGCTTGGTTGTTAAATCGAAGGGAAGGGATTCAGTCCGTGGGCGCAGAGCTCCAAAAGGCGGAGTGAACAATCTAGgtaatgtgtttttttccctctCCAATAAGCAGCTCTTCACAGCGCTGTTGACGTCTGTGGCTTGACAGGAGATTCGAGACAGTCAGTGTGGTTCCCTTCACGCCGACATGTCTTGCTAGTCTGTTCTACGCTATGGGGTGTTGGTTCAAAGTTCACCCAAGCAAACGTGTCGGTGGATTCATGACGACCGAAAACATCGATGTTGACGTTAGCGAAATTAAACGCACTCTTCAATCATGCTCAATGGGAAGCTAAAGCACGGAGGATATAGCAGCTAAGCTAACGTTGGCCACCGAGGCGCGCATACGTGACTGACGGTTCTTAATTCCAAAGTAGCGCGAGCTCCTTTTACACTTAAAAAGGCAGGGAAAATAGGGACCGCTTGCATTGATATTGGCAGCACACCATCTTCTCGTCTGCGGAAAAAAATGCTTAAAACATCCACTTGGTTCTAGACGGATTTGGGTATTACTATTACAGCTCCGCACGGCGCTCCTCTCCGTTGACTTGCATTTCGCTACTCTCCAAAGAAGACACCGCTCTCAAAATGTGACCAGCTGCGTGCACCGCAGTTATCCTCGGGCGAGAAAAATGCTTAACATTCATTCTTGCTTCTCACTTTGAAAGGCCCGACTGTTCAACGTTCCGAAATGTAACGTTACTCGTTGCTCAATCCCTGGCGTCGTAAGTGCCATCAAAATTCCTCTAGCAGCTATCCTACTACAGTTTATCAAAACGCATACATCTGCAGCAATAATAAACTCATTTTAGCTACAGGGGAAAATATCAAATTTTTATTTCGAATAGGTTTCATCTCCCATCTGTTTTCGCGGAAATACTTGGTACATTCTCATGGCTCCATCGTCTCCTCTAGTCAGACCAAACCAGCTACCGGCATCTTCAACGCCTGGTCAAATAAGGCCGACTATGAAATGCTATGCTGAATTAAGTTCAAATAAGAAAAATAGCCAATTCGTTGATTTTATTCATCAGATAGGGATTTTAAATGTCAAATCACGGCCAGTCTTTGCTCCATCGAACGCCTCCCTTTTTCTCAAGCCgtctgtctgtgtagtgtctGATCTCTCCAATCATCCCATTCATCACCTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2462530 False 1195 lncRNA 0.45 1 13018084 13019278
TU2462532 True 1450 lncRNA 0.45 1 13018084 13019533

Neighbor

gene id symbol gene type direction distance location
trnag-ccc-7 NA coding downstream 16025 13001989 ~ 13002059 (-)
LOC110509659 LOC106563050 coding downstream 16242 12982130 ~ 13001842 (-)
LOC110509658 LOC106563051 coding downstream 232053 12781844 ~ 12786031 (-)
LOC110509362 NA coding downstream 291122 12726130 ~ 12726962 (-)
gfra2b LOC106563053 coding downstream 390946 12557132 ~ 12627138 (-)
LOC110509662 LOC106563046 coding upstream 72121 13091654 ~ 13150475 (-)
LOC110509664 bhmt coding upstream 146007 13165540 ~ 13171705 (-)
LOC118945314 NA coding upstream 216126 13235659 ~ 13236134 (-)
LOC110509325 LOC106563096 coding upstream 320468 13340001 ~ 13345828 (-)
LOC110511055 LOC106563043 coding upstream 328433 13347966 ~ 13366093 (-)
G2153670 NA non-coding downstream 1230 13016463 ~ 13016854 (-)
G2153654 NA non-coding downstream 9969 12980338 ~ 13008115 (-)
G2153650 NA non-coding downstream 40381 12975798 ~ 12977703 (-)
G2153643 NA non-coding downstream 51159 12966651 ~ 12966925 (-)
G2153641 NA non-coding downstream 64159 12953693 ~ 12953925 (-)
G2153676 NA non-coding upstream 6030 13025563 ~ 13025771 (-)
G2153729 NA non-coding upstream 87475 13107008 ~ 13117136 (-)
G2153749 NA non-coding upstream 141756 13161289 ~ 13161590 (-)
G2153753 NA non-coding upstream 153487 13173020 ~ 13173427 (-)
G2153765 NA non-coding upstream 169065 13188598 ~ 13188834 (-)
G2153174 NA other downstream 368589 12649176 ~ 12649495 (-)
atg10 atg10 other downstream 1073931 11940630 ~ 11945825 (-)
G2152107 NA other downstream 1295605 11722072 ~ 11722479 (-)
LOC110509625 LOC106568355 other downstream 1492932 11456618 ~ 11525214 (-)
LOC100135966 rps27a other downstream 1774024 11241994 ~ 11244060 (-)
G2153683 NA other upstream 67920 13087453 ~ 13091356 (-)
G2154361 LOC106563107 other upstream 709300 13728833 ~ 13731096 (-)
G2154418 LOC106563033 other upstream 761126 13780659 ~ 13782254 (-)
G2154637 NA other upstream 980992 14000525 ~ 14010167 (-)
cdc26 cdc26 other upstream 1008792 14028310 ~ 14030112 (-)

Expression


Co-expression Network