G2153543 (LOC106563046)


Basic Information

Item Value
gene id G2153543
gene name LOC106563046
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13091689 ~ 13093888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2462391
AAATAACTGGGATATATATAAAGCAGTTAGGAATGCGATGACGGGAAAAGACGAGTcaaatgcaaaaaaaacaaacatcttaaAAAGCACATTAAATTGCGTGATATTGCTTTATAAATCCTTACTCCATAAATACGTTTTTAAGCATGCCCATGTATTTTCAGGATGTACACTTGATTACATTATAATACATTTTTCAGTTTAATATTGCACTTATCTAGTGACAGATTCATCTTCAAATCAGACCAGGCCAGCCACATGCATAAGGTCATAGGTCAAACTGTAGACAGAAATAAGATTAGATGGCTAAAAATGGAAACTAATAATACATTTGGATTATACAAAGATATGTATAAAAGAAAACATACATAAATACAATGATGAATGAGTGATTTCCCAACAGATATACATACTGTAAAAACCTGTCTACCGAGAACATGAGACAGGACTAGGAGGGCATCTCATTACTAAAATGACTGCCTCTAGACTCCTAAACTTCTCTCCATCTGCACTAAGAGCGTGGAAAGCTAATTCCACTATGTTGCTGTCACCTACCCACGCTTTATAGATCAGTGCAGATGGAGAGGAGACGAGGAACCCACTTCATACTGAGACGCAGCCAGAGATCTGGATGCTGCAGAAAGTCACATGATTGGATTTTGACCACTTGCCATAAAGACACAGCATGAGCTCCATATGCTCAGTCCACTAACTCACTGAGGTTAGTTACCACACCACTGGTGGATTCAGTGAGGTAAACACACAGATAGAAATATGATGAATGGAGCTGACAGGATCCCTATTCTATATGACAGACAATAATATCAGCACCATACATTTCTATGTGACTGTTTTTCAAGACCACTGAAGATGGTGCTGGAAAAATACAGTACTATGACCTGGCCAAACAATTTGGACAGCAGTTGTGCACTCTCAGTCCTTCAGTTCCTAACAGTACAGCATTCTTTCTTCATTGTGTCCTTCATACAGTGCAAGAATCGTTTCAGTTTTGACACAACTCTTAGATATAAAAACTGATAAAATAGTGAAAGGTAGATTAAAAACATGAAGCGACTCCTGGTAAAACCGGTACTAGTGGACTCGCTTGGAAAATAATAGCAGTAAAAACAaggcagtaaaaaaaaaacactcctttGGAAATAAAAATGACCGTAAAAGGTAAAAGCAAACTTTAAAAAATGTCAACAGAAACAACACacttcatgaatattaatatggTATATGGAATGAATGACACCTGGGTAGAGCTGCATACTTCGGCTGGCTGTCAGGGCTCCGATCTTACAGAGAACATCATCGTGACTTCTCAACCCCAATACCAGGGGTGGCCAAGCTCACCCATGTGGGTGCAAGCTTTTGTTCCAGCCAAGCAATAACACACCTTATTCTGCAGGGGGTTGAAGAAACGTTGAAGAAAACGCTCAATCCTGTCACATGTAAAAGCAAACGCACCACAGCAACCTACAGTTCAACTCTCCAACCTCATAGTTCAGTCTACATACGTGATCCCAGAACCCTAGCTTTCTAGTCGGTGCACTGACAAGGGGCCCTTATTCCCCCACTTGGTACAGGACAATGAAGGAATCGAATGAAGGAATTTCATTTCCATAGTGACTTCCATCACAAGGATCTCAATGTGCTTGACTTGGGATAGAGCAGGAGGAGCACAACATAGAAAACCAGGAGGAAAGGCTAGTGGTCCATTTCAAAGACGAGAAGAAACAGTAAGAAAGTTACTTCTGACCTattttctgaagaaaaaaaacatcagGAAACATCTCTACACCGCTTTCTGGGTCTGTCCGTGTGGAGCCAGAAATAGTAGATAGTAGCAGGCTGAGATCAAAGGTCAGAGTCCCAGTCGGTGCAGGGCAGGCCCTCGTCCTCAGACTCGGACTCAGGCGAAGCCTCCTTGATGCGTCTCAGGGCTTCGTGGATGGAGCGGGTCAGAGCGTCGGCAGAGTGGGGGAACGAGCCCTTGGGGTGCCGCTGCTGGTCCGGCCGCGTCCGCACCTTCCTCAGCCTAACGCCCTGCCTGATCTGGGCCAGGATGTTGTTGCTCTCGTCATCGTCTGGATCGGGGGCTAGGACCCGGAGCTCTGCCTTCCGCAGGTGGAAGCTGCCTCGCTTGAGGGAGTTCAGGACCTCGTCCATG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2462391 True 2176 lncRNA 0.44 2 13091689 13093888

Neighbor

gene id symbol gene type direction distance location
LOC110509661 LOC106563047 coding upstream 3518 13018053 ~ 13088171 (+)
LOC110509656 NA coding upstream 646368 12438582 ~ 12445321 (+)
atp6v1b2 LOC106563054 coding upstream 697121 12377064 ~ 12394568 (+)
dusp11 dusp11 coding upstream 719342 12365542 ~ 12372347 (+)
tcf7l1a LOC106563056 coding upstream 738217 12328752 ~ 12353472 (+)
LOC110509665 NA coding downstream 132519 13226407 ~ 13230321 (+)
arsb arsb coding downstream 140583 13234471 ~ 13259942 (+)
LOC110509667 LOC106563044 coding downstream 168778 13262666 ~ 13336582 (+)
LOC110509669 LOC106563041 coding downstream 283414 13377302 ~ 13442767 (+)
LOC110509670 tbca coding downstream 389218 13483106 ~ 13493733 (+)
G2153478 NA non-coding upstream 348 13089531 ~ 13091341 (+)
G2153518 NA non-coding upstream 41398 13049784 ~ 13050291 (+)
G2153499 NA non-coding upstream 74615 13016852 ~ 13017074 (+)
G2153480 LOC106563050 non-coding upstream 89868 12989099 ~ 13001821 (+)
G2153473 NA non-coding upstream 119134 12972325 ~ 12972555 (+)
G2153550 NA non-coding downstream 72539 13166427 ~ 13167406 (+)
G2153582 bhmt non-coding downstream 73598 13167486 ~ 13170130 (+)
G2153583 NA non-coding downstream 87199 13181087 ~ 13181518 (+)
G2153767 NA non-coding downstream 97184 13191072 ~ 13191363 (+)
G2153316 NA other upstream 331199 12759880 ~ 12760490 (+)
G2152639 NA other upstream 784251 12300792 ~ 12307438 (+)
G2152150 NA other upstream 1325338 11764224 ~ 11766351 (+)
G2151555 NA other upstream 1725197 11359557 ~ 11432252 (+)
G2150729 NA other upstream 2629469 10461753 ~ 10462220 (+)
G2154294 NA other downstream 574401 13668289 ~ 13669170 (+)
G2154391 NA other downstream 678820 13772708 ~ 13776134 (+)
G2154438 NA other downstream 712125 13806013 ~ 13813970 (+)
G2154512 NA other downstream 839360 13915670 ~ 13935819 (+)
G2155696 NA other downstream 1924739 15018627 ~ 15093949 (+)

Expression


Co-expression Network