G2153582 (bhmt)


Basic Information

Item Value
gene id G2153582
gene name bhmt
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13167486 ~ 13170130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2462431
TGTATACGGTCTCCTTACCTGGCACGGACCCATGGCTTTGTGTGCATCTCCAGACCAGCACCCCAGTTACCGTGCTTCTCTGAGGCAGCGGGCAGGCAGCCTCTTTCTGTGGCCAGCTCCTCAGCCACAGCCCTGATGTGGTAGGGCTCGAAGCCGCAGCAGCCACCGATGAAACGGATGCCAACGTTGAAGGCCTCTCTGGCGTACTTGTGCATGTCCCACCTGGTCAGAATCCTGGGCTCCAgaccAAGGGGAACTCTGGCAGGTCGATGAATCCCTGGCAGTTGCAGTCAGGGGTGTGGAAGGCCAGAGGCTGGACCATGTAATGGGCCTTCAGCCCCGCCTTCTCCACACCCTCCTTCATCATTTTCACCGTCTTCACACAGGTCATAGGGTCAAAGTGACAGTTGATGCCCACAATATTGGCTCCtattggcagagagagagagtgtatgtgtatataaactcag
>TU2462433
CAGCTTTGACCAGCCGGACGGCACAGTCTCCAGGGCTGACTCCGTTGAGGTCTCCGTCAGGGCCGATACAAAGAGAGGCACACACTGGCTTGCCTGAGGTCTTCAGCACCTGCACGGCCCACTCTGCCTCCTCCACATGCTCAAAGTactgcacaaaCTCTGCAATCATGAAATCCACGTTCTTCTTGACGAAGACATCAAGCTGCCTCTTGAAGATGCCCTTGACCTCGTCCTCGCACTTGCAGCTCAAGTAAGAGGGGGTCTGGGAGACCCCGCCCGCCACCATCGCGTCACCCTCATTGGCCACCTCCCTGGCCAGGTCACAGGCGGCCTCGTTGATTTGTGTGCCCTGGTGTCAATCAAATATTGATGAGT

Function

symbol description
bhmt Predicted to enable betaine-homocysteine S-methyltransferase activity. Acts upstream of or within digestive system development and type B pancreatic cell development. Predicted to be located in cytoplasm. Is expressed in hepatocyte; liver; yolk; and yolk syncytial layer. Orthologous to several human genes including BHMT (betaine--homocysteine S-methyltransferase).

NR:

description
betaine--homocysteine S-methyltransferase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2462431 False 470 lncRNA 0.56 2 13167486 13168098
TU2462433 True 375 lncRNA 0.57 2 13169587 13170130

Neighbor

gene id symbol gene type direction distance location
LOC110509661 LOC106563047 coding upstream 79315 13018053 ~ 13088171 (+)
LOC110509656 NA coding upstream 722165 12438582 ~ 12445321 (+)
atp6v1b2 LOC106563054 coding upstream 772918 12377064 ~ 12394568 (+)
dusp11 dusp11 coding upstream 795139 12365542 ~ 12372347 (+)
tcf7l1a LOC106563056 coding upstream 814014 12328752 ~ 12353472 (+)
LOC110509665 NA coding downstream 56277 13226407 ~ 13230321 (+)
arsb arsb coding downstream 64341 13234471 ~ 13259942 (+)
LOC110509667 LOC106563044 coding downstream 92536 13262666 ~ 13336582 (+)
LOC110509669 LOC106563041 coding downstream 207172 13377302 ~ 13442767 (+)
LOC110509670 tbca coding downstream 312976 13483106 ~ 13493733 (+)
G2153550 NA non-coding upstream 80 13166427 ~ 13167406 (+)
G2153543 LOC106563046 non-coding upstream 73598 13091689 ~ 13093888 (+)
G2153478 NA non-coding upstream 76145 13089531 ~ 13091341 (+)
G2153518 NA non-coding upstream 117195 13049784 ~ 13050291 (+)
G2153499 NA non-coding upstream 150412 13016852 ~ 13017074 (+)
G2153583 NA non-coding downstream 10957 13181087 ~ 13181518 (+)
G2153767 NA non-coding downstream 20942 13191072 ~ 13191363 (+)
G2153986 NA non-coding downstream 425505 13595635 ~ 13596456 (+)
G2153316 NA other upstream 406996 12759880 ~ 12760490 (+)
G2152639 NA other upstream 860048 12300792 ~ 12307438 (+)
G2152150 NA other upstream 1401135 11764224 ~ 11766351 (+)
G2151555 NA other upstream 1800994 11359557 ~ 11432252 (+)
G2150729 NA other upstream 2705266 10461753 ~ 10462220 (+)
G2154294 NA other downstream 498159 13668289 ~ 13669170 (+)
G2154391 NA other downstream 602578 13772708 ~ 13776134 (+)
G2154438 NA other downstream 635883 13806013 ~ 13813970 (+)
G2154512 NA other downstream 763118 13915670 ~ 13935819 (+)
G2155696 NA other downstream 1848497 15018627 ~ 15093949 (+)

Expression


Co-expression Network