XLOC_004050



Basic Information


Item Value
gene id XLOC_004050
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 15756726 ~ 15761871 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00008782
CTGCTTTTGAATATAACATGATTATatgtttaaatttgtatataaataaacagcaatttTACCAATGCAATGTGGAAATGTACTTTAAATGAAAGGCCCAGTAGTTTTACTTTTAAGTGTTCCTTCTGTTAGTTAACATAATCCACAGGATGTCGATTCCTGGCTTGTCAGAAGCATTATAAGTAATTCTATTGTATATAAAGAAGAGGGGGGACATTTTGTAAactaaataaagtatttattgtACAAAAATGACAGAAATAATGATGAACATGTTGTCTTCTTTGCATGAAACCAAACTACTTTATAATTAAATGCTCTACACAATATAGAGTTGCTCAACATGACTGAAAAAAGTTGGTAAATCTTGAAAGTAGAAAGTCTGTCAACActatgcaatgcaaaaaaaaaaaagtcatttcattttttatttttacatttacagatcACTATATTTTTTCTCCACACAttatataacaaaaaaacaatgagaacattatattatacagaaatttcaaatgtaaaacaacaaggTGCTGGATTGTAATCTCCACaccatacattttattatttgtgtcCTTAAAGAACTCTAGCATATAGACCCTGTGGCATATTATAAGATGTATAAATTGTTGAAATAATAATGTTCTACTGACAGAGTATTCTTAAAGTTCTAAACAACATTGATAGAACTGAAATGGCAAGAGTAAAGTTTTATGGtgcaataaatgcatttttattttgagtaTAAATATAGATGATTTTGGCTCTGctgatatataaaattaaaatttccTAGCAAAGCTTTAAACTGATTTGATGAGGtagctttttcattttttctgAGATGTAGTTTTTAGAAGGAATAATTGATTTTGTTTATAAATCTTGCTCCTACTCTCAACCTAGTAGTCCATTGCTAGTTAATACAAAAGTCCTTGTTTATTTTTGGGACCTGTATTCTCATTCGCATGACAATTTTTATTCCAGCCATAATCGGCCACAAACAACTTTTTAGAGTTATGTTTGTACATTTTATAGAATTACAAAacagattattttttaaactccAGTCTGGGGTCAGGTATGTAATTGTGGACATTTGTCAAACCATAGTGGTCATTTTACAGGTTTCTGCTTCAACTGAATGAAAAGATAAAACATAATGTATGGTGAATGGGCTATAGACACCTTAGagatttttcagttaaatacaaAAGTCAAATACAAATGGAAACAACATTCCTCTTGCTATTTTCTTCACATAGtgcattttttcctttttttttgttggttaGTAGAGTGcccaaaataatgttttaaatccATCAGCCCCATCACATATCCATTCTTTAAATACTTTCTTTtttgatatatacatatattagatACTTAGATTTAGTGTGATAAGGCTCCTCTTTAATCCAACATTATAGtgcttttgttttcaacaaagGTACATCTAtgatgaatagaaaaaaaaatctattctaCCTTTTTCCCTCTCCATCCTTTGCTTTTTCAGCACTCCCAATGTTTAATGTACCATTATAGGTTGGTAAGGGGCAGAAatggtatttaattaaaaacaaaaatgctaaatgcaattactttttcttattttctcTAAATTGCAGACATTGATAAACTAATACTGCAGTAATCCACAGTGCCATATgtaatttttaattatgtaaatgcCTATATCAACATAAAGGCCTATATTATTCTATATTCAGTAAAACTAAAAACGTCATTTGTAACCCTCATTATGTATGTAATGTTTATGTTGAGCTTATAAATATTATAGTTGAGTTTATAAAGGTTTATAACATACTGAGTCATTTATGTTGAGTTGAACTCTCTAGGAATCACCATCGGGGAACTCAAGCTTGCAAAGCAGCACCAAGTGGTAACGCCCGGGAGGAGGCCAAAGCCTTTAGTAGAGTGTGCTCTCATCCTTGGGAGACACAGCTCGCTTTGAGTATGGTATGCAAGCACGATGGCATTCACTATCTAGTGGGTCAACCCCTGTTTAGATACGGCACTTCTCTGCTGCTGACCTCTGAAACAGACCAAGCCGGGTCAGGATCTCATGAAACCATGACAGTTAGCTGATCCAAATTCCAGCCATGATTCATTGATTGAAAATACTTCCCTGTCCCTGACTCTCTTGAATGATGTCAACGCAGTCAGCTGACTCGAGCGGATCAAATGGATGTCTCCACAGTCCGTAGGGTTTACGGAGAGATCCCATTTAGAATCATTTTTAATCAGTATTAGAGTTTGGAAAAttctaatacaaataaaaacattattccTCATGCCAATTTCTTCACATAGTGCATTTTTTGTTGGTTAGTAGAGTGCCCAAATTAATGTTTTATACCCTTCAGCCCCATCATATCACcattctttaaatattttgttatgtgatatatacatatattacttAGAAGGCCCATCTTTAAACCAACATTATagtgcttttgtttttaacaaaggTAAATCTGTgatgaatatgaatataaattattaatctaCCTAGGGCTTGCAGGTTCCCTACTTGGTTCCTTAGAAGAGTAGTAAAAACCTTGGGCACATAAAGCCAAGCCAGGATCTTAGGATAATGTGAGAATTAGCCAGTCTAAATTGCAGGCATGATTCGTTGACCAAAAATACTTTCTTATTCCTGACCCTTTTGAACAATGCCAGCATGGTCAGCTGACCAGAGCAGATCAAATGAATGTCTTTACAGCACTGCAACAGCCTGCCCTCCAGCTTAACCTGAAGAAAAGAAGACATGACACTCATTGGGCAAGTTCAGGGGACCTCATGCTACAGAAATGCACCAAACAATGATTAGACTCCGCAAGCGGTGGCCAGACACCTAGACGCGGATGGCAGATGGTGCCACAACACCAAGAGGAAAGTCTCAGTGGGAGTGTCAGGGAGGGGCTTTAATAAGGAGTGTGAGTTTGGAACCTAGGTTCAGGCGGGCCGAAGAGGCACAAATACAAAAATCTGCTCCTCATCCTCCTTGATCTTGCACAGTGTCTGTGCGAAAGGGCTCACTGGGGTAGACTTGGGGCCAGTGGTAAACCAGGGCCACGTCTGGATCCATAGAAGCAGATGGGGAGCGATCTGTGGCATGCAACAGGAACAAACCTGGAAAAATGGCATTGAAACCTGAAGCTCTTTCTGTTCCTCTGAAAAGAATGGGACAGTGAGCCAGGGGAGTCCCCACCATGTCAGTTAGACATAGATTCAGATTCCACCCATTTTTCTTGAAGAGCACAGCCCTTATAACCAAATCAAGCTAGGGCTGCGAGCACCTCAAATGgagcaccccccccccctcccatgCTTTCTTCGGTTAATGACAATTTACCCTCTGATGCCATGATGGACATCTGTTTGCCGAATGCATTAAACAAACGTGCAACCACCCCAAAGGACGTACTGCACACTCTTCTAAAGCCTAGATGATTTGTGTTGATAAGGAACAGGAGAGCCACAGGGATTACCCAGCGACTTCATCCCACTGATACTCTCACTTTGCATTTACATTGGGCTTCAGCGTCAGCACTTGACAGAGGCCGTGTCTAAAGGTGGGGCTGAcgcaatcgtcatagcagcatcagtcAATGAAATCAGTCTGCAATCGGCTACAGTTTTAGCTgtggtatttgcataaagtgatttgattggctgacgctcccgatggtgcttgaaaagttgagaaatacCCAATttctgcagcaagcaatgccGCAGCAGCACCGACATACTCACAATTCAGTTTGGCAATGATTGGGTTCACCCATTCAAATTGAATAGAAAGCATTGATGCTGACgctctgtgtgaatggggcgttatacTGACTTAAGTGTTCGCTGCAGTGCAGGGAAAAACAGAGGGTGCTCGCACTAAAACAGCACAAGCCGCAATTAAGCACAACCACAGTCATGCCCACACAGTGTGAGCATGATCTCCTCAAACACTGCGTCGCATGCTGAAGCCAGATGTGTAACTAAGCAATCAGATCAGTCACCAGTGAAAGGAAAGCTCATTTTGTGGCAAACGTCCAGAGGAGTTTGCAGAGGAATTCCAGTGAGTGCCCAGACACAGGAGAGAAGCCCAGCTCGACTGCCGCTGAATGCATTGTTCTCGCACTGGAATCCAGCTTGCAGCTGAACTTGAAGTTGCTAGCCCATCAAGGGACGTATTGGTTCTGAAGCGGCAGTCTAATGAGCTTCCTGTCAAGGCAGCCTTTATACTCCTTTTTGGGGAGTTTCTACCCCTGTGAGAGCTGCACTCACCAATTTCATATGCATTCCATAGgtctgtttttaaacaaatcagaGTGATTGGTCCTTCTAAGCGAATCCTCTTGTCAGTCAACTCAACATAAACTCAAAGTAATTGACTGAGGAGAAAATCGAAATTCACAAGCATGTATTATTTTATCTTACATTGATGCTTTTTTATTGATACCAGAATTTCAAGGCAGAGTTACAGGAAGATgtgtgtaatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgcatgtatgcatgctttttttgttattgtacattctgaaacacacactcacagtaaTAGGAGCTACATCTTAAGCTTCTGTGTCTAAATATGTTACTTTTCTCcttaaaagtaagaaaaaaatcatctttttatttttcttttcttatttctttttacAAGATCATGAAAGTGTGCCTATATTAGGTCAGAGCTACACAGCACAatgaaaatataacaatatattaaattaaattaaaatgtaaaaaaaaaaaaaaaacgaaaaaatatATTGgtatattgattaaaaaaaattcaaagaaaagcTATTTTAATGCGGATGTCATAGTGGTAGAAGCATTATTGGAAGGGGAGGGGTCAATGTGTCTCCTACCATGATTTTGTCAATTGCATTGAACATTTGCATTGAACTAAAATTAAAGGTTATTTTGATAACCTAGATTAAGTTTTAGGGTGTTG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00008782 True 5035 lncRNA 0.37 2 15756726 15761871

Neighbor


gene id symbol gene type direction distance location
XLOC_004049 ghrh coding downstream 321231 15345654 ~ 15435495 (-)
XLOC_004048 NA coding downstream 443127 15311381 ~ 15313599 (-)
XLOC_004047 rpn2 coding downstream 459516 15225534 ~ 15297210 (-)
XLOC_004046 slc1a8a coding downstream 666162 15068307 ~ 15090564 (-)
XLOC_004045 CR550302.1 coding downstream 737199 15018138 ~ 15019527 (-)
XLOC_004051 FP016142.5 coding upstream 13581 15775452 ~ 15780923 (-)
XLOC_004052 FP016142.4 coding upstream 34222 15796093 ~ 15797568 (-)
XLOC_004053 FP016142.3 coding upstream 36387 15798258 ~ 15799923 (-)
XLOC_004054 FP016142.7 coding upstream 40579 15802450 ~ 15803637 (-)
XLOC_004055 FP016142.1 coding upstream 44521 15806392 ~ 15809019 (-)
XLOC_004019 CR450764.8 misc downstream 3065035 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 3134959 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 3165430 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 3243464 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 3256464 12499966 ~ 12500262 (-)
XLOC_004063 CR854846.1 misc upstream 365511 16127382 ~ 16127678 (-)
XLOC_004042 NA non-coding downstream 882596 14873329 ~ 14874130 (-)
XLOC_004041 CU019562.1 non-coding downstream 927402 14827374 ~ 14829324 (-)
XLOC_004039 NA non-coding downstream 997638 14754905 ~ 14759088 (-)

Expression



Co-expression Network