G2154028 (arsb)


Basic Information

Item Value
gene id G2154028
gene name arsb
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13245159 ~ 13258807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2462923
CCTGGGTAGCCAGTCAGCAGCTTCCACTGCATGCTGCGGATGGCAGCGTGGATAGACACGTTGAAGCCTGAGTTGGACCAGGACCAAGGGTTGGAGGTGGAGCCTCCACGCCTCACTGGAGCATTAGAGACAGGCAACCCCTGGGAAGCACTGCCTGGACATGGAGCGATGTCAACGTAGAGAGGGTCAATGTTGTGTAGCAGCTCCAGTCTGGGTGAAGCGTGACCTTTACTGATAGCGTTCCACACATTATAGCCATCCAGTGGCTTCGTCCCATCGGTCGATCCCCCGGCCAGGCCCACCAGCGTCGGCAGCCAATCAGAGATGTGTATGAGTTGGCGGCTGACAGTCCCAGGTTGTTTCAGCAGCGGGCTAGTTACAAAGCCAACGCCCCTAACCCCACCCTCCCACAGTGACCACTTCCTGCCTCTCAGAGGCCAGT

Function

symbol description
arsb Human ortholog(s) of this gene implicated in mucopolysaccharidosis VI. Orthologous to human ARSB (arylsulfatase B).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2462923 True 442 lncRNA 0.58 3 13245159 13258807

Neighbor

gene id symbol gene type direction distance location
LOC118945314 NA coding downstream 9025 13235659 ~ 13236134 (-)
LOC110509664 bhmt coding downstream 73454 13165540 ~ 13171705 (-)
LOC110509662 LOC106563046 coding downstream 94684 13091654 ~ 13150475 (-)
trnag-ccc-7 NA coding downstream 243100 13001989 ~ 13002059 (-)
LOC110509659 LOC106563050 coding downstream 243317 12982130 ~ 13001842 (-)
LOC110509325 LOC106563096 coding upstream 81194 13340001 ~ 13345828 (-)
LOC110511055 LOC106563043 coding upstream 89159 13347966 ~ 13366093 (-)
LOC110509326 LOC106563036 coding upstream 280931 13539738 ~ 13633839 (-)
LOC110509672 LOC106563037 coding upstream 375170 13633977 ~ 13643719 (-)
LOC118945261 NA coding upstream 463445 13722252 ~ 13727337 (-)
G2154030 NA non-coding downstream 7428 13235313 ~ 13237731 (-)
G2154024 NA non-coding downstream 14823 13228570 ~ 13230336 (-)
G2154023 NA non-coding downstream 17195 13226949 ~ 13227964 (-)
G2154020 NA non-coding downstream 43143 13201791 ~ 13202016 (-)
G2154018 NA non-coding downstream 45196 13199509 ~ 13199963 (-)
G2154177 NA non-coding upstream 230217 13489024 ~ 13553640 (-)
G2154288 NA non-coding upstream 404917 13663724 ~ 13664017 (-)
G2154373 NA non-coding upstream 481235 13740042 ~ 13740337 (-)
G2154409 NA non-coding upstream 501784 13760591 ~ 13760919 (-)
G2154404 NA non-coding upstream 514935 13773742 ~ 13774229 (-)
G2153683 NA other downstream 153803 13087453 ~ 13091356 (-)
G2153174 NA other downstream 595664 12649176 ~ 12649495 (-)
atg10 atg10 other downstream 1301006 11940630 ~ 11945825 (-)
G2152107 NA other downstream 1522680 11722072 ~ 11722479 (-)
LOC110509625 LOC106568355 other downstream 1720007 11456618 ~ 11525214 (-)
G2154361 LOC106563107 other upstream 470026 13728833 ~ 13731096 (-)
G2154418 LOC106563033 other upstream 521852 13780659 ~ 13782254 (-)
G2154637 NA other upstream 741718 14000525 ~ 14010167 (-)
cdc26 cdc26 other upstream 769518 14028310 ~ 14030112 (-)
si:ch211-202f5.3 LOC106563025 other upstream 795447 14054254 ~ 14056905 (-)

Expression


Co-expression Network