G2154512


Basic Information

Item Value
gene id G2154512
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13915670 ~ 13935819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2463448
GATGGAAGAGgatctgagccctaggaccatgcctcaggactacctgacatgatgactccttgctgtccccagtccacctggccgtgctgtggctccagtttcaactgttctgccttattattatttgaccatgttggtcatctatgaacatttgaacatcttggccatgttctgttataatctccacacagccagaagaggactggccacaccacatagcctggttcctctctaggttttttcctaggttttggtctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttacggttttaggctgggtttctatacagcactttgagatatcatctgatgtacgaagggctatataaatacatttgatttgatttgaggacaACATAGTCCTCATTAGCTTGATACGTATTTCCAGTCTTCCGCCACATGGTCCAATATCCATCCTTAGGACTCGTTGTTAGGTATCCCTTCCTGTTTGTGGACTCTCTGACCACTCCTAAATCCCAGTTAAGCCCATTCACCTGCAACTCATAGTAGAATCTCCCAGAGGAGAAGTCCTTATTTCCCAGGACACAGGCAGCTGGGTCAAACCTCTTTGTCAGGGAGACTACAACACGGGTTTCCCGGTATCACTTGTTTCTTGTTCTTAGACCGTGTGAGACAGAAGTGAGCAGTATCAGGGTCCAGAGTCACATCCACAGCATACTGCTGTATCCTCTTCAGCTCAGCATCACACAACTTCTTCACTTCACTCCACTCCACAGTGTCTCCTCCAGCAGAGACGCAGCTCTCTGCAGGTGCCCCACACCCAGACTGCTGTGAACCCTGATCTCAGACCAGTCCTTGACGGGAGAAAGACTGCAGAGGGATGGGGAGCTCTGGAGGAGgtggaggtggtcctCAGTGTGTGACAGCTGCTCCAGCTCAGTGTgtctcctctgtagctcagtgatTTCCTGATCCAGCTCTTTAATGAGGCCTTCAGCCTGCCTCTCTGCTGCTTTCAGCTTGTCCTCGACCACCTCAATGAAATCAACCTGGCTTCTCTCAATGGAACGCACCAGGGCAGTGAAGACCTGCACGCTGCCTGCTATCTcgctctctgcgtctctcttgCAGAGCGCTATTGAGTATTTGATGTCCTTAACCTTCTGCAGTTGCTTCTGGATCATCTGCTGCACTTCTACCTCCATCTTCCCCAGCTGGGCTTTCTTCTTTCCATACTCTTCCTTTAGAGGGACGGTGTAGTGAGTCTTGTGGTCTGTTTTTATACACAAGACACAAACACACGTCTGGTCAGTCCTACAGAACATCTCCAGGAGTTTGTCATGCTCCTTACACACCCTGTCTTCCAGGTTCTCCACAGGGTCGAtcagcttgtgtttcttcagggCTGGGGCGATCTGATGAGCCTCCaggtgagtctcacagtaagaggcCAGACACACCAGGCAAGACTTCAGGGCCTTGTGCTTCGTCCCAGTGCAGACGTCACAGGCCACTCCTCTAAGCTCAGTAGGGCAATGGTCTGGGCCGCTGGTAGCTTTCACTTGAACAGACTTCCTGAACTGAGCAGCCATCTCAGAAATGAAAGTATTGACAAAGAGATCTGGTCTCCTATCAAATGATTTTTTACACATTGGACACTGGCACAGGTCAGTGGTATCCCAGTACTTTCTGATACAGGCCTTGCAGAAGTTGTGTCCACATGGAATGGCTACAGGATCAGTGAACACATCCAGACAGATAGAGCACAGGAACTGCTCTTCGGACAGGAGACTGCTGGAGGATGCCA
>TU2463447
tctctctttctttctctctctcggaggatctgagccctaggaccatgcctcaggactacctgacatgatgactccttgctgtccccagtccacctggccgtgctgtggctccagtttcaactgttctgccttattattatttgaccatgttggtcatctatgaacatttgaacatcttggccatgttctgttataatctccacacagccagaagaggactggccacaccacatagcctggttcctctctaggttttttcctaggttttggtctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttacggttttaggctgggtttctatacagcactttgagatatcatctgatgtacgaagggctatataaatacatttgatttgatttgaggacaACATAGTCCTCATTAGCTTGATACGTATTTCCAGTCTTCCGCCACATGGTCCAATATCCATCCTTAGGACTCGTTGTTAGGTATCCCTTCCTGTTTGTGGACTCTCTGACCACTCCTAAATCCCAGTTAAGCCCATTCACCTGCAACTCATAGTAGAATCTCCCAGAGGAGAAGTCCTTATTTCCCAGGACACAGGCAGCTGGGTCAAACCTCTTTGTCAGGGAGACTACAACACGGGTTTCCCGGTATCACTTGTTTCTTGTTCTTAGACCGTGTGAGACAGAAGTGAGCAGTATCAGGGTCCAGAGTCACATCCACAGCATACTGCTGTATCCTCTTCAGCTCAGCATCACACAACTTCTTCACTTCACTCCACTCCACAGTGTCTCCTCCAGCAGAGACGCAGCTCTCTGCAGGTGCCCCACACCCAGACTGCTGTGAACCCTGATCTCAGACCAGTCCTTGACGGGAGAAAGACTGCAGAGGGATGGGGAGCTCTGGAGGAGgtggaggtggtcctCAGTGTGTGACAGCTGCTCCAGCTCAGTGTgtctcctctgtagctcagtgatTTCCTGATCCAGCTCTTTAATGAGGCCTTCAGCCTGCCTCTCTGCTGCTTTCAGCTTGTCCTCGACCACCTCAATGAAATCAACCTGGCTTCTCTCAATGGAACGCACCAGGGCAGTGAAGACCTGCACGCTGCCTGCTATCTcgctctctgcgtctctcttgCAGAGCGCTATTGAGTATTTGATGTCCTTAACCTTCTGCAGTTGCTTCTGGATCATCTGCTGCACTTCTACCTCCATCTTCCCCAGCTGGGCTTTCTTCTTTCCATACTCTTCCTTTAGAGGGACGGTGTAGTGAGTCTTGTGGTCTGTTTTTATACACAAGACACAAACACACGTCTGGTCAGTCCTACAGAACATCTCCAGGAGTTTGTCATGCTCCTTACACACCCTGTCTTCCAGGTTCTCCACAGGGTCGAtcagcttgtgtttcttcagggCTGGGGCGATCTGATGAGCCTCCaggtgagtctcacagtaagaggcCAGACACACCAGGCAAGACTTCAGGGCCTTGTGCTTCGTCCCAGTGCAGACGTCACAGGCCACTCCTCTAAGCTCAGTAGGGCAATGGTCTGGGCCGCTGGTAGCTTTCACTTGAACAGACTTCCTGAACTGAGCAGCCATCTCAGAAATGAAAGTATTGACAAAGAGATCTGGTCTCCTATCAAATGATTTTTTACACATTGGACACTGGCACAGGTCAGTGGTATCCCAGTACTTTCTGATACAGGCCTTGCAGAAGTTGTGTCCACATGGAATGGCTACAGGATCAGTGAACACATCCAGACAGATAGAGCACAGGAACTGCTCTTCGGACAGGAGACTGCTGGAGGATGCCA
>TU2463446
agctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttgggtttctatacagcactgggtttctatacagcactttgagatatcatctgatgtacgaagggctatataaatacatttgatttgatttgaggacaACATAGTCCTCATTAGCTTGATACGTATTTCCAGTCTTCCGCCACATGGTCCAATATCCATCCTTAGGACTCGTTGTTAGGTATCCCTTCCTGTTTGTGGACTCTCTGACCACTCCTAAATCCCAGTTAAGCCCATTCACCTGCAACTCATAGTAGAATCTCCCAGAGGAGAAGTCCTTATTTCCCAGGACACAGGCAGCTGGGTCAAACCTCTTTGTCAGGGAGACTACAACACGGGTTTCCCGGTATCACTTGTTTCTTGTTCTTAGACCGTGTGAGACAGAAGTGAGCAGTATCAGGGTCCAGAGTCACATCCACAGCATACTGCTGTATCCTCTTCAGCTCAGCATCACACAACTTCTTCACTTCACTCCACTCCACAGTGTCTCCTCCAGCAGAGACGCAGCTCTCTGCAGGTGCCCCACACCCAGACTGCTGTGAACCCTGATCTCAGACCAGTCCTTGACGGGAGAAAGACTGCAGAGGGATGGGGAGCTCTGGAGGAGgtggaggtggtcctCAGTGTGTGACAGCTGCTCCAGCTCAGTGTgtctcctctgtagctcagtgatTTCCTGATCCAGCTCTTTAATGAGGCCTTCAGCCTGCCTCTCTGCTGCTTTCAGCTTGTCCTCGACCACCTCAATGAAATCAACCTGGCTTCTCTCAATGGAACGCACCAGGGCAGTGAAGACCTGCACGCTGCCTGCTATCTcgctctctgcgtctctcttgCAGAGCGCTATTGAGTATTTGATGTCCTTAACCTTCTGCAGTTGCTTCTGGATCATCTGCTGCACTTCTACCTCCATCTTCCCCAGCTGGGCTTTCTTCTTTCCATACTCTTCCTTTAGAGGGACGGTGTAGTGAGTCTTGTGGTCTGTTTTTATACACAAGACACAAACACACGTCTGGTCAGTCCTACAGAACATCTCCAGGAGTTTGTCATGCTCCTTACACACCCTGTCTTCCAGGTTCTCCACAGGGTCGAtcagcttgtgtttcttcagggCTGGGGCGATCTGATGAGCCTCCaggtgagtctcacagtaagaggcCAGACACACCAGGCAAGACTTCAGGGCCTTGTGCTTCGTCCCAGTGCAGACGTCACAGGCCACTCCTCTAAGCTCAGTAGGGCAATGGTCTGGGCCGCTGGTAGCTTTCACTTGAACAGACTTCCTGAACTGAGCAGCCATCTCAGAAATGAAAGTATTGACAAAGAGATCTGGTCTCCTATCAAATGATTTTTTACACATTGGACACTGGCACAGGTCAGTGGTATCCCAGTACTTTCTGATACAGGCCTTGCAGAAGTTGTGTCCACATGGAATGGCTACAGGATCAGTGAACACATCCAGACAGATAGAGCACAGGAACTGCTCTTCGGACAGGAGACTGCTGGAGGATGCCA

Function

NR:

description
nuclear factor 7, ovary-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2463448 False 1817 lncRNA 0.50 4 13915670 13935819
TU2463447 False 1833 lncRNA 0.50 3 13918139 13935819
TU2463446 True 1652 TUCP 0.49 2 13933248 13935819

Neighbor

gene id symbol gene type direction distance location
LOC110509678 LOC106563033 coding upstream 132965 13779399 ~ 13782705 (+)
LOC110509676 NA coding upstream 168211 13745413 ~ 13747459 (+)
LOC110509673 LOC106563107 coding upstream 184559 13728812 ~ 13731111 (+)
crf-bp crf-bp coding upstream 218184 13678513 ~ 13697486 (+)
LOC110509671 LOC106563039 coding upstream 411641 13498470 ~ 13504029 (+)
LOC110509328 LOC106563105 coding downstream 4368 13940187 ~ 13942428 (+)
LOC110509680 LOC106563031 coding downstream 22814 13958633 ~ 13996453 (+)
atp6v1g1 LOC106563029 coding downstream 64435 14000254 ~ 14010168 (+)
slc31a1 LOC106563027 coding downstream 79223 14015042 ~ 14028322 (+)
prpf4 prpf4 coding downstream 99503 14035322 ~ 14041282 (+)
G2154396 NA non-coding upstream 128955 13786515 ~ 13786715 (+)
G2154384 NA non-coding upstream 149101 13766276 ~ 13766569 (+)
G2154379 NA non-coding upstream 162996 13752324 ~ 13752674 (+)
G2154340 NA non-coding upstream 203970 13711493 ~ 13711700 (+)
G2154533 NA non-coding downstream 10650 13946469 ~ 13981651 (+)
G2154564 NA non-coding downstream 77062 14012881 ~ 14013081 (+)
G2154565 NA non-coding downstream 77397 14013216 ~ 14013423 (+)
G2154573 NA non-coding downstream 108351 14044170 ~ 14044421 (+)
G2154574 NA non-coding downstream 108634 14044453 ~ 14044814 (+)
G2154438 NA other upstream 101700 13806013 ~ 13813970 (+)
G2154391 NA other upstream 139536 13772708 ~ 13776134 (+)
G2154294 NA other upstream 246500 13668289 ~ 13669170 (+)
G2153316 NA other upstream 1155180 12759880 ~ 12760490 (+)
G2152639 NA other upstream 1608232 12300792 ~ 12307438 (+)
G2155696 NA other downstream 1082808 15018627 ~ 15093949 (+)
G2157602 NA other downstream 2414898 16350717 ~ 16353665 (+)
G2158499 LOC106563144 other downstream 3253525 17189344 ~ 17191128 (+)
LOC110509751 LOC106563328 other downstream 5124724 18962089 ~ 19065920 (+)
LOC118945267 NA other downstream 5130359 19066137 ~ 19068784 (+)

Expression


Co-expression Network