G2155230 (LOC106563019)


Basic Information

Item Value
gene id G2155230
gene name LOC106563019
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 14362528 ~ 14364469 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2464217
CTCCGATGTATCCCTCATCACAGAGACATTGTCCATTCACACAGCGGCCCATGTCCTGGCAGTTGTTGAGGCAGCTCAGCTCTCCACAGTTGTCTCCCATGTATCGCTCCTCACACATGCACTTCCCATTAACACAGTGCCCCCTGTTGTTGCAATTATCAGGGCAGGTGAGTTCAGAGCAGTCGACACCCGCATAGCCCTCCAGGCAGACACATTTGCCATCCACGCAGTATCCCCTGTCCAGGCAGTCATTGGGACAGTGCTTCTCAGTGCAGTCTTCCCCTGTGAAGCCCTCGTCGCAGACGCACTGCCCGTCAACGCAGCGTCCGCGGTTCAGGCAGTTGTTGGGGCAGCTCAGCTCGCTGCAGTCCTCACCGGTGAAGCCAGCATAGCAGACACACCGGCCATCCACACAATCTCCACTGCCATAGCAGTCTGAGGGGCAGATCTTGATGCTGCAGTCCTCACCACCGAACCCTTCATCGCACACACACTGTCCGTTGACACAGCGGCCCCGGTTGAGGCAGTTGTTGGGGCAGGAGAGCTCAGAGCAGTCCTCTCCCTGGTAGCCTACATTGCAGACGCACTGCCCGTTGACACACTGTCCCCTGTTGTGGCAGTTGTTGGGGCAAGCCAGCTGGCTACAATCCTCTCCTTGGTAGCCAGTATTGCAGATACACATGCCGTTGAAGCAGACACCTCTATCGTTGCAGTCACTGGGGCAGGTGAGCTTGGAGCAGTCCTCTCCAGTGTAGCCAGCGCTGCAGACACACTGGCCGTCCACACAGAAACCATTTCCCAGGCAGTCACTTGGGCAGGTTTTCTCCACACAGTCCACCCCGGTGAATCCTTCTTCGCAGTAGCAGGTTCCATTGACGCAGCGGCCGCGGTCGTAGCAGTCGTTGGGGCAGATGAGTTCGGAGCAGTCGTAGCCCGTCCAGggctcttcacacacacactccccatccACACACTTTCCACGGCTTAGACAGTTGTTCAGGCAGTCTGTCTGAGAACAGTCCTCTCCAGTGTAACCCTTGGCACAGACACAGACCCCACCAATACATTGTCCGTTCCCACCGCAGTCCACTTTGCAAACCTTGAGTGAACAGTCGTCCCTGCCAAAGCCCTCAAAGCAGACGCACTTCCCATCCACGCAGCGACCTTGGTCCTGGCAGTTGTTGGGGCATTCAGACTCTGTGCAGTTGTGTCCCTTCCAGCCAGGCTCGCAAATGCAACCACAGGTGTCAGCACTGTAGTTGCCATGGCCATTGCAATAAGGCTTGGTCCC
>TU2464218
CTCCGATGTATCCCTCATCACAGAGACATTGTCCATTCACACAGCGGCCCATGTCCTGGCAGTTGTTGAGGCAGCTCAGCTCTCCACAGTTGTCTCCCATGTATCGCTCCTCACACATGCACTTCCCATTAACACAGTGCCCCCTGTTGTTGCAATTATCAGGGCAGGTGAGTTCAGAGCAGTCGACACCCGCATAGCCCTCCAGGCAGACACATTTGCCATCCACGCAGTATCCCCTGTCCAGGCAGTCATTGGGACAGTGCTTCTCAGTGCAGTCTTCCCCTGTGAAGCCCTCGTCGCAGACGCACTGCCCGTCAACGCAGCGTCCGCGGTTCAGGCAGTTGTTGGGGCAGCTCAGCTCGCTGCAGTCCTCACCGGTGAAGCCAGCATAGCAGACACACCGGCCATCCACACAATCTCCACTGCCATAGCAGTCTGAGGGGCAGATCTTGATGCTGCAGTCCTCACCACCGAACCCTTCATCGCACACACACTGTCCGTTGACACAGCGGCCCCGGTTGAGGCAGTTGTTGGGGCAGGAGAGCTCAGAGCAGTCCTCTCCCTGGTAGCCTACATTGCAGACGCACTGCCCGTTGACACACTGTCCCCTGTTGTGGCAGTTGTTGGGGCAAGCCAGCTGGCTACAATCCTCTCCTTGGTAGCCAGTATTGCAGATACACATGCCGTTGAAGCAGACACCTCTATCGTTGCAGTCACTGGGGCAGGTGAGCTTGGAGCAGTCCTCTCCAGTGTAGCCAGCGCTGCAGACACACTGGCCGTCCACACAGAAACCATTTCCCAGGCAGTCACTTGGGCAGGTTTTCTCCACACAGTCCACCCCGGTGAATCCTTCTTCGCAGTAGCAGGTTCCATTGACGCAGCGGCCGCGGTCGTAGCAGTCGTTGGGGCAGATGAGTTCGGAGCAGTCGTAGCCCGTCCAGggctcttcacacacacactccccatccACACACTTTCCACGGCTTAGACAGTTGTTCAGGCAGTCTGTCTGAGAACAGTCCTCTCCAGTGTAACCCTTGGCACAGACACAGACCCCACCAATACATTGTCCGTTCCCACCGCAGTCCACTTTGCAAACCTTGAGTGAACAGTCGTCCCTGCCAAAGCCCTCAAAGCAGACGCACTTCCCATCCACGCAGCGACCTTGGTCCTGGCAGTTGTTGGGGCATTCAGACTCTGTGCAGTTGTGTCCCTTCCAGCCAGGCTCGCAAATGCAACCACAGGTGTCAGCACTGTAGTTGCCATGGCCATTGCAATAAGGCTTGGTCCC

Function

NR:

description
tenascin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2464217 False 1291 lncRNA 0.57 2 14362528 14364469
TU2464218 True 1291 lncRNA 0.57 2 14362528 14364469

Neighbor

gene id symbol gene type direction distance location
LOC110509689 LOC106563103 coding downstream 176254 14184291 ~ 14186274 (-)
wu:fi75a02 LOC106563022 coding downstream 214006 14122040 ~ 14148522 (-)
pisd LOC106563023 coding downstream 248253 14064611 ~ 14114275 (-)
si:ch211-202f5.3 LOC106563025 coding downstream 305623 14054254 ~ 14056905 (-)
si:ch211-202f5.2 LOC106563026 coding downstream 316882 14041249 ~ 14045646 (-)
LOC110509692 LOC106563018 coding upstream 84978 14449447 ~ 14492040 (-)
LOC110509694 LOC106563017 coding upstream 225306 14589775 ~ 14771641 (-)
LOC110509697 LOC106563143 coding upstream 449965 14814434 ~ 14943201 (-)
LOC110509329 NA coding upstream 581143 14945612 ~ 14947114 (-)
LOC110509700 LOC106563141 coding upstream 609486 14973955 ~ 15000591 (-)
G2155138 NA non-coding downstream 127805 14234505 ~ 14234723 (-)
G2155059 NA non-coding downstream 135319 14226050 ~ 14227209 (-)
G2155130 NA non-coding downstream 144998 14215150 ~ 14217530 (-)
G2155121 NA non-coding downstream 155039 14207283 ~ 14207489 (-)
G2155064 NA non-coding downstream 161921 14197382 ~ 14200607 (-)
G2155253 NA non-coding upstream 31285 14395754 ~ 14396780 (-)
G2155286 NA non-coding upstream 62988 14427457 ~ 14427659 (-)
G2155303 NA non-coding upstream 109711 14474180 ~ 14474831 (-)
G2155331 NA non-coding upstream 151038 14515507 ~ 14527818 (-)
G2155376 NA non-coding upstream 206309 14570778 ~ 14570999 (-)
G2155120 NA other downstream 131522 14227820 ~ 14231006 (-)
G2155063 LOC106563020 other downstream 138597 14223121 ~ 14223931 (-)
cdc26 cdc26 other downstream 332758 14028310 ~ 14030112 (-)
G2154637 NA other downstream 352361 14000525 ~ 14010167 (-)
G2157715 NA other upstream 2016721 16381190 ~ 16386045 (-)
G2157743 NA other upstream 2057208 16421677 ~ 16423421 (-)
G2158088 LOC100136012 other upstream 2243156 16607625 ~ 16608006 (-)
G2158111 akna other upstream 2279212 16643681 ~ 16646597 (-)
LOC110509757 LOC106563370 other upstream 4911799 19275539 ~ 19277044 (-)

Expression


Co-expression Network