XLOC_004052 (FP016142.4)


Basic Information

Item Value
gene id XLOC_004052
gene name FP016142.4
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 15796093 ~ 15797568 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007730
ctgtaagtacagggaacaaggaggtaacaagagaggaacaaagcttcactttaatttacaaccctcaaatgtggtatttaccctgtaagtacagggaacaaggaggtaacaagagaggaacaaagcttcactttaatttacaaccctcaaatgtggtatttaccctgtaagtacagggaacaaggagggaacaagggaggaacaaagcttcactttaatttacaaccctcaaatgtggtatttaccctgtaagtacagggaacaaggagggaacaaatactgtatttaccctttaactacagggaacaaagagggaagaagctgaactttaacatactagtgtatacttgaacactaagaacagagtaaactacagcagcagtttttattgattgaagaccaaattactagatttttctataaagtatcagctatacatttactgaaatgcaacagttagcccccctgtgcaacagcagtaaagatgcgagcctgttttaatctgcattgaaccctgacggtaggactatgtcatgcaaagttatttgttgatagtgagttatggggacattgatggctttggtgagatcgacgagtaaacataaggtaagtagtgtatggaaatatattttatattgaattgcagatttaaaatacatacagtatacaataagggttcataatttcacaggttgtaaaccttttattcattaaacaccccatataaaacccaagcactgaataagagtactaatgtactcacgcaggtgcatatacagtacatttgcagatagcaataggttgtcaccatccttgcataattctttatatgtatacaatac
>TCONS_00007729
ctgtaagtacagggaacaaggaggtaacaagagaggaacaaagcttcactttaatttacaaccctcaaatgtggtatttaccctgtaagtacagggaacaaggagggaacaaatactgtatttaccctttaactacagggaacaaagagggaagaagctgaactttaacatactagtgtatacttgaacactaagaacagagtaaactacagcagcagtttttattgattgaagaccaaattactagatttttctataaagtatcagctatacatttactgaaatgcaacagttagcccccctgtgcaacagcagtaaagatgcgagcctgttttaatctgcattgaaccctgacggtaggactatgtcatgcaaagttatttgttgatagtgagttatggggacattgatggctttggtgagatcgacgagtaaacataaggtaagtagtgtatggaaatatattttatattgaattgcagatttaaaatacatacagtatacaataagggttcataatttcacaggttgtaaaccttttattcattaaacaccccatataaaacccaagcactgaataagagtactaatgtactcacgcaggtgcatatacagtacatttgcagatagcaataggttgtcaccatccttgcataattctttatatgtatacaatac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100605

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007730 False 842 lncRNA 0.37 2 15796093 15797568
TCONS_00007729 True 678 lncRNA 0.36 2 15796093 15797568

Neighbor

gene id symbol gene type direction distance location
XLOC_004051 FP016142.5 coding downstream 15170 15775452 ~ 15780923 (-)
XLOC_004050 NA coding downstream 34222 15756726 ~ 15761871 (-)
XLOC_004049 ghrh coding downstream 360598 15345654 ~ 15435495 (-)
XLOC_004048 NA coding downstream 482494 15311381 ~ 15313599 (-)
XLOC_004047 rpn2 coding downstream 498883 15225534 ~ 15297210 (-)
XLOC_004053 FP016142.3 coding upstream 690 15798258 ~ 15799923 (-)
XLOC_004054 FP016142.7 coding upstream 4882 15802450 ~ 15803637 (-)
XLOC_004055 FP016142.1 coding upstream 8824 15806392 ~ 15809019 (-)
XLOC_004056 rap1ab coding upstream 35997 15833565 ~ 15875054 (-)
XLOC_004057 FP003590.1 coding upstream 48020 15845588 ~ 15846513 (-)
XLOC_004019 CR450764.8 misc downstream 3104402 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 3174326 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 3204797 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 3282831 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 3295831 12499966 ~ 12500262 (-)
XLOC_004063 CR854846.1 misc upstream 329814 16127382 ~ 16127678 (-)
XLOC_004045 CR550302.1 non-coding downstream 776566 15018138 ~ 15019527 (-)
XLOC_004042 NA non-coding downstream 921963 14873329 ~ 14874130 (-)
XLOC_004059 CR848761.1 non-coding upstream 260623 16058191 ~ 16058307 (-)

Expression


Co-expression Network