G2158088 (LOC100136012)


Basic Information

Item Value
gene id G2158088
gene name LOC100136012
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 16607625 ~ 16608006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2467297
gttcaagatgacggtcaatcaccctcggtctggggctccatgcaagatctcacctcgtggggcatcaatgattatgaggaaggtgagggatcagcccagaactacacggcaggacctggtcaatgacctgaagagagctgggaccacagtctcaaagaaaaccattagtaacacactacgccgtcatggattaaaatcttgCAGCgtacgcaaggtccccctgctcaagccagcgcatgtccaggcccgtctgaagtttgccaatgaccatctagatgatccagaggaggaatgggagaaggtcatgtggtctgatgagacaaaaatagagctttttggtctaaactccactcgccgtgtttggaggaagaagaaggatgag

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2467297 True 382 TUCP 0.51 1 16607625 16608006

Neighbor

gene id symbol gene type direction distance location
LOC110509706 LOC106563136 coding downstream 590126 15970492 ~ 16017499 (-)
LOC110509703 LOC106563138 coding downstream 1182317 15105979 ~ 15425308 (-)
LOC110509702 LOC106563139 coding downstream 1530615 15038817 ~ 15087213 (-)
LOC110509700 LOC106563141 coding downstream 1607034 14973955 ~ 15000591 (-)
LOC110509329 NA coding downstream 1660511 14945612 ~ 14947114 (-)
stxbp1a LOC106563129 coding upstream 50380 16658386 ~ 16701533 (-)
slc31a2 copt2 coding upstream 157339 16765345 ~ 16776377 (-)
LOC110509719 fut7 coding upstream 250914 16858920 ~ 16866531 (-)
LOC110509724 LOC106563119 coding upstream 458356 17066362 ~ 17093537 (-)
LOC110509723 LOC106563118 coding upstream 486050 17094056 ~ 17135891 (-)
G2158087 NA non-coding downstream 1218 16606194 ~ 16606407 (-)
G2158080 NA non-coding downstream 12153 16595262 ~ 16595472 (-)
G2158077 NA non-coding downstream 15939 16591445 ~ 16591686 (-)
G2158068 NA non-coding downstream 32382 16574988 ~ 16575243 (-)
G2158066 NA non-coding downstream 35400 16571940 ~ 16572225 (-)
G2158089 NA non-coding upstream 228 16608234 ~ 16608433 (-)
G2158090 NA non-coding upstream 802 16608808 ~ 16609041 (-)
G2158096 NA non-coding upstream 16617 16624623 ~ 16625284 (-)
G2158097 NA non-coding upstream 21489 16629495 ~ 16629972 (-)
G2158101 akna non-coding upstream 27416 16635422 ~ 16635794 (-)
G2157743 NA other downstream 184204 16421677 ~ 16423421 (-)
G2157715 NA other downstream 221580 16381190 ~ 16386045 (-)
G2155120 NA other downstream 2376619 14227820 ~ 14231006 (-)
G2155063 LOC106563020 other downstream 2383694 14223121 ~ 14223931 (-)
si:ch211-202f5.3 LOC106563025 other downstream 2550746 14054254 ~ 14056905 (-)
G2158111 akna other upstream 35675 16643681 ~ 16646597 (-)
LOC110509757 LOC106563370 other upstream 2668262 19275539 ~ 19277044 (-)
G2162005 NA other upstream 3376539 19984545 ~ 19984779 (-)
G2162127 NA other upstream 3475139 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 3480224 20088225 ~ 20093695 (-)

Expression


Co-expression Network