G2158107


Basic Information

Item Value
gene id G2158107
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 16640078 ~ 16640703 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2467316
CATCTGCTCAAACGGTTTAAGTTTCCCTCTCCTCAGGAGCTCTTCAAATGTCTGCACCTGCTGGAGGAACCTCTCAGCCTGCTTTGAGAGAGCCCTGGTCAGCTGCTCTCCAACTCCAGGGCCCAGGCTTCTGGGGGATGAGGAGGCCGcagaggagggacagacagaggagactCCACTATATCCTGTAGTGCGGAGAGAAATTTGTTTTTTAGTAAAAGACAATATAAATGTGTAAAGAAATGTTGAATGAGAGGCAGAATCAACTGTCAATGGAGTGTAAGAACGTATTGAAACAAAGcaatggctgtgtcccaaatgttcCTAAttcccataaggctctggtcaaaagtaatgcacaagAAAGGGAttggggtgtcatttgggaagcaTATATAAGATGGCTGTTAGTACCTTGGTGGGCAGCCTGTCCATTTAGGTAAACAGAGCCTGAGCTGAGCTCCGCCCTCTGAGCGTGGGGAAAAGTTAGGGTCATGACCTTTGACCCTTCATGGAGTACACCTGATTGGACAGCGTGACTGGGCTTGGGAGGGTCGGAGTAGAGGCTCACCTGGAGATAGAGACAACAGGGAAAAACAGGCGTCAAAAGTAAtaaattatatgag

Function

NR:

description
AT-hook-containing transcription factor-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2467316 True 626 lncRNA 0.48 1 16640078 16640703

Neighbor

gene id symbol gene type direction distance location
LOC110509706 LOC106563136 coding downstream 622579 15970492 ~ 16017499 (-)
LOC110509703 LOC106563138 coding downstream 1214770 15105979 ~ 15425308 (-)
LOC110509702 LOC106563139 coding downstream 1563068 15038817 ~ 15087213 (-)
LOC110509700 LOC106563141 coding downstream 1639487 14973955 ~ 15000591 (-)
LOC110509329 NA coding downstream 1692964 14945612 ~ 14947114 (-)
stxbp1a LOC106563129 coding upstream 17683 16658386 ~ 16701533 (-)
slc31a2 copt2 coding upstream 124642 16765345 ~ 16776377 (-)
LOC110509719 fut7 coding upstream 218217 16858920 ~ 16866531 (-)
LOC110509724 LOC106563119 coding upstream 425659 17066362 ~ 17093537 (-)
LOC110509723 LOC106563118 coding upstream 453353 17094056 ~ 17135891 (-)
G2158101 akna non-coding downstream 4284 16635422 ~ 16635794 (-)
G2158097 NA non-coding downstream 10106 16629495 ~ 16629972 (-)
G2158096 NA non-coding downstream 14794 16624623 ~ 16625284 (-)
G2158090 NA non-coding downstream 31037 16608808 ~ 16609041 (-)
G2158089 NA non-coding downstream 31645 16608234 ~ 16608433 (-)
G2158108 NA non-coding upstream 32 16640735 ~ 16640954 (-)
G2158109 NA non-coding upstream 358 16641061 ~ 16641886 (-)
G2158149 NA non-coding upstream 62884 16703587 ~ 16704085 (-)
G2158198 LOC106567281 non-coding upstream 156198 16796901 ~ 16799275 (-)
G2158213 NA non-coding upstream 200698 16841401 ~ 16843760 (-)
G2158088 LOC100136012 other downstream 32072 16607625 ~ 16608006 (-)
G2157743 NA other downstream 216657 16421677 ~ 16423421 (-)
G2157715 NA other downstream 254033 16381190 ~ 16386045 (-)
G2155120 NA other downstream 2409072 14227820 ~ 14231006 (-)
G2155063 LOC106563020 other downstream 2416147 14223121 ~ 14223931 (-)
G2158111 akna other upstream 2978 16643681 ~ 16646597 (-)
LOC110509757 LOC106563370 other upstream 2635565 19275539 ~ 19277044 (-)
G2162005 NA other upstream 3343842 19984545 ~ 19984779 (-)
G2162127 NA other upstream 3442442 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 3447527 20088225 ~ 20093695 (-)

Expression


Co-expression Network